View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_15 (Length: 403)

Name: NF0825_low_15
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_15
NF0825_low_15
[»] chr3 (11 HSPs)
chr3 (11-401)||(1717748-1718138)
chr3 (188-376)||(1739395-1739583)
chr3 (206-355)||(1754877-1755026)
chr3 (198-376)||(1749254-1749432)
chr3 (10-91)||(46893416-46893497)
chr3 (37-91)||(13639459-13639513)
chr3 (10-162)||(54186928-54187080)
chr3 (10-91)||(29235677-29235758)
chr3 (23-91)||(48543213-48543281)
chr3 (22-91)||(20909363-20909432)
chr3 (59-91)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (10-92)||(30085447-30085529)
chr8 (10-91)||(33440574-33440655)
chr8 (10-91)||(28700583-28700664)
chr8 (13-91)||(6580862-6580939)
chr8 (39-89)||(31703822-31703872)
chr8 (10-74)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (7-92)||(51475233-51475318)
chr4 (23-91)||(31699549-31699617)
chr4 (27-91)||(37306476-37306540)
chr4 (15-92)||(6540258-6540335)
chr4 (37-91)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (24-91)||(709-776)
[»] chr5 (7 HSPs)
chr5 (7-91)||(41020248-41020332)
chr5 (29-91)||(42958487-42958549)
chr5 (23-91)||(5990589-5990657)
chr5 (23-91)||(18237206-18237274)
chr5 (23-91)||(30892150-30892218)
chr5 (23-91)||(32153763-32153831)
chr5 (36-108)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (36-91)||(932035-932090)
chr1 (10-83)||(11709656-11709729)
chr1 (10-91)||(19078941-19079022)
chr1 (10-91)||(19126829-19126910)
chr1 (23-89)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (10-92)||(17878710-17878792)
chr7 (23-91)||(557447-557515)
chr7 (36-92)||(47822035-47822091)
chr7 (10-91)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (23-89)||(5140042-5140108)
chr2 (6-83)||(864178-864255)
chr2 (23-91)||(6951739-6951808)
chr2 (12-105)||(16011989-16012082)
chr2 (23-91)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (10-91)||(7447636-7447716)
chr6 (10-90)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 1717748 - 1718138
Alignment:
Q  11 tctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatcta 110  Q
    |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  1717748 tctctaacgtccactttcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagatccatatagatttcatcta 1717847  T
Q  111 atacgagggtaaatgttnnnnnnngtgttagtaagagagtgttcttaacattctgtttcaggaatatatgaataaattttagatatatagatacaaaacc 210  Q
    ||||||| || | ||||       || ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  1717848 atacgagagtgagtgttagaaaaagtattagtaagagagtgttcttaacattctgcctgaggaatatatgaataaattttagatatatagatacaaaacc 1717947  T
Q  211 tttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaagaccattttg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1717948 tttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaaaaccattttg 1718047  T
Q  311 agaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaagattaatgttactttaaagtacataatt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1718048 agaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaatattaatgttactttaaagtacataatt 1718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 188 - 376
Target Start/End: Original strand, 1739395 - 1739583
Alignment:
Q  188 tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc 287  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  1739395 tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc 1739494  T
Q  288 ccactatgctcaagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaagat 376  Q
    ||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  1739495 ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagat 1739583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 1754877 - 1755026
Alignment:
Q  206 aaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaagacca 305  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||| | |||||||||| || ||||||||||||| ||||| || |||  ||||    
T  1754877 aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattacca 1754976  T
Q  306 ttttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatg 355  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1754977 ttttgagaaccttcaactgcatgcaagtccacaatcactttcatcccatg 1755026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 1749254 - 1749432
Alignment:
Q  198 tagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgct 297  Q
    |||||||||||||||| ||||||||| || || ||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||| |    
T  1749254 tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt 1749353  T
Q  298 caagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaagat 376  Q
    ||   |||||||||||||||||||| ||||||||||| ||||||||||||||| |||| || |||||| ||| ||||||    
T  1749354 cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatctcatgatttctgcaatttagaaagat 1749432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 46893497 - 46893416
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   ||||||||||| | |||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  46893497 ctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 13639459 - 13639513
Alignment:
Q  37 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  13639459 tgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 54187080 - 54186928
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatct 109  Q
    ||||||||||   |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| |||||||||| | |||  ||||| |     
T  54187080 ctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagattcacatgagtttcaccc 54186981  T
Q  110 aatacgagggtaaatgttnnnnnnngtgttagtaagagagtgttcttaacatt 162  Q
    |||| ||| || ||||||       ||||||| ||||||||||||||| ||||    
T  54186980 aataggagagtgaatgttagagagagtgttagaaagagagtgttcttagcatt 54186928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 29235677 - 29235758
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   |||||||||||  |||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||    
T  29235677 ctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 48543281 - 48543213
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||  ||||||||||||||| || || | |||||||||||| | |||||||| ||||||||    
T  48543281 actctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgaga 48543213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 20909432 - 20909363
Alignment:
Q  22 tactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||||  |||||||||| ||||  | ||  ||||| ||||||||| |||||||||||||||||    
T  20909432 tactctcttattgggtgaaattcaggtgggcaccacctattgaaaatggatcccacataaagtggtgaga 20909363  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 54140812 - 54140844
Alignment:
Q  59 tattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||||||| |||||||||||||||||    
T  54140812 tattggaaatggatcccacataaagtggtgaga 54140844  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 30085529 - 30085447
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 92  Q
    ||||||||||  |||||||||||| |||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||    
T  30085529 ctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagat 30085447  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 33440655 - 33440574
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||  |||||||||||  |||||| |||||||| || || | |||||||||||||| |||||||||||||||||    
T  33440655 ctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 28700583 - 28700664
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   |||||||||||  || ||||| |||||| || || |||||||||||| ||| |||||||||||||||||    
T  28700583 ctctctaacactcactctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 28700664  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 6580862 - 6580939
Alignment:
Q  13 tctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||  || ||||||||  ||||||||||||||| || || | ||||||||| |||| |||||||||||||||||    
T  6580862 tctaacattcaccctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgaga 6580939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 31703872 - 31703822
Alignment:
Q  39 aaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 89  Q
    ||||| |||||||||||| |  ||||||||||||| |||||||||||||||    
T  31703872 aaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 16895271 - 16895335
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatca 74  Q
    ||||||||||   ||||||||||| | | ||||||||||||||| || |||||| ||||||||||    
T  16895271 ctctctaacactcactctcttattgaatcaaattcatgtggataccacatattgaaaatggatca 16895335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 51475318 - 51475233
Alignment:
Q  7 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 92  Q
    ||||||||||||| | |||||||||||  ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  51475318 acactctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 51475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 31699617 - 31699549
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||  ||||||||||||||| ||||| | |||||||||||| | |||||||| ||||||||    
T  31699617 actctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgaga 31699549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 37306540 - 37306476
Alignment:
Q  27 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||  ||||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  37306540 tcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 6540258 - 6540335
Alignment:
Q  15 taacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 92  Q
    ||||||| |||||||||||  |||||||  |||||| ||||| | ||||||||||||||  ||| |||||||||||||    
T  6540258 taacatccactctcttattgggtgaaatcaatgtggttatcatacattggaaatggatcctacacaaagtggtgagat 6540335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 43480299 - 43480353
Alignment:
Q  37 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||||| || || | |||| ||||||||| |||||||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 43480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 709 - 776
Alignment:
Q  24 ctctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||| ||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgaga 776  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 41020332 - 41020248
Alignment:
Q  7 acactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||||| | |||||||||||  |||||||  |||||| || || |||||||||||| ||| |||||||||||||||||    
T  41020332 acactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 42958487 - 42958549
Alignment:
Q  29 ttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||| ||||||||||||||| || ||   |||||||||||||| |||||||||||||||||    
T  42958487 ttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgaga 42958549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 5990657 - 5990589
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| |||||||| ||||||||    
T  5990657 actcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 18237274 - 18237206
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||| |||||  ||||||||||||||| ||||| | |||| |||| |||| |||||||||||||||||    
T  18237274 actcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgaga 18237206  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 30892150 - 30892218
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||  ||||| ||||||||| || || | ||| |||||||||| |||||||| ||||||||    
T  30892150 actctcttattcggtgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 30892218  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 32153831 - 32153763
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||  ||||||  |||||||||  || |  ||||||||||||| |||||||||||||||||    
T  32153831 actctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgaga 32153763  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 34320985 - 34320913
Alignment:
Q  36 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatc 108  Q
    ||||||| |||||||||| || |  ||| |||| |||| ||||||||||||||||| | | ||||||||||||    
T  34320985 gtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacatggatttcatc 34320913  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 932035 - 932090
Alignment:
Q  36 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  932035 gtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 11709729 - 11709656
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 83  Q
    ||||||||||   ||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||    
T  11709729 ctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 19078941 - 19079022
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19078941 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 19126829 - 19126910
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   |||||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19126829 ctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 14562669 - 14562603
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 89  Q
    ||||||||||| ||||||||| |||| | || || |  ||||||||||||| |||||||||||||||    
T  14562669 actctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 17878710 - 17878792
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 92  Q
    |||| |||||| ||||||||||||  |||||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||    
T  17878710 ctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 557515 - 557447
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||   |||||||||||||| ||||| | |||  ||||||||| |||||||||||||||||    
T  557515 actctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 47822035 - 47822091
Alignment:
Q  36 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 92  Q
    ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  47822035 gtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 43930110 - 43930030
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||   ||||| |||||  ||||||||||||||| || || | |||| |||||||||||| ||||||||||||||    
T  43930110 ctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcaca-ataaagtggtgaga 43930030  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 5140108 - 5140042
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 89  Q
    ||||||||||| |||||||||||||||| || || | |||| ||||||||| |||||||||||||||    
T  5140108 actctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 5140042  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 864255 - 864178
Alignment:
Q  6 aacactctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 83  Q
    ||||||||||||||   |||||||||||  ||||||||||||||| || || | ||| |||||||||| |||||||||    
T  864255 aacactctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaag 864178  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 6951739 - 6951808
Alignment:
Q  23 actctcttatttagtgaaa-ttcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||||||||| ||||||| ||||||||| |  || | |||| ||||||||| |||||||||||||||||    
T  6951739 actctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccacataaagtggtgaga 6951808  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 16012082 - 16011989
Alignment:
Q  12 ctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttc 105  Q
    |||||||| ||||| ||||||| | | |||| ||||||||||  | || |||||||| ||| | |||||||||||||||||  |||| ||||||    
T  16012082 ctctaacacctactttcttattgaataaaatacatgtggatactacattttggaaatagattaaacataaagtggtgagatccatatagatttc 16011989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 37285253 - 37285185
Alignment:
Q  23 actctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    ||||| |||||  ||||||||||||||| || || | |||||||||||||| ||| ||||||| |||||    
T  37285253 actcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 7447716 - 7447636
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 91  Q
    |||||||||||| |||||||| ||  ||||||||||||||| || || | ||| |||||||||| |||||||||||||||||    
T  7447716 ctctctaacatc-actctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 32439506 - 32439586
Alignment:
Q  10 ctctctaacatctactctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgag 90  Q
    ||||||||||   |||||||||||  ||||||||||||||| || || | |||||||||||||| ||||||||| ||||||    
T  32439506 ctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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