View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825_low_18 (Length: 336)
Name: NF0825_low_18
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 60 - 307
Target Start/End: Original strand, 246403 - 246651
Alignment:
| Q |
60 |
aaaatacaataatgaaacacctgaacaaacagtaactacaatgaaaacacgtctaggcttatgaaaccaacgnnnnnnn-gaccttcttggttttggtct |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
246403 |
aaaatacaataatgaaacacctgaacaaacagtaactacaatgaaaacacgtctaggcttatgaaaccaacgttttttttgaccttcttggttttggtct |
246502 |
T |
|
| Q |
159 |
gccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaagaaaataagaaaacccattaaagttag |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
246503 |
gccacaattacaacaatgttgcacattcttagggtttttaaaacccagtgtacctaatctcttaaaaattgaagaaaataagaaaacccattaaagttag |
246602 |
T |
|
| Q |
259 |
ctcctttggaacccgatttcaaagacccagattgtataattctggaact |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
246603 |
ctcctttggaacccgatttcaaagacccagattgtataattctggaact |
246651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 307
Target Start/End: Original strand, 21960809 - 21960906
Alignment:
| Q |
211 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaagttagctcctttggaacccgatttcaaagacccagattgtataattctggaact |
307 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||| |||| | |||||| ||||||| || | |||||| ||||| |
|
|
| T |
21960809 |
cctaatctcttagaaattgaagaaaatgaagaaaacccattaaagctagcacctttgttacccaaattcaaatacccagactgcaaaattctcgaact |
21960906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 21960401 - 21960452
Alignment:
| Q |
16 |
atcaaatgtgttcgcttcgtgtaaggaatagtttccatatttccaaaataca |
67 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
21960401 |
atcaaatgcgttcgcttcgtataaggaacagtttccatattcccaaaataca |
21960452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 29941374 - 29941415
Alignment:
| Q |
16 |
atcaaatgtgttcgcttcgtgtaaggaatagtttccatattt |
57 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
29941374 |
atcacatgtgttcgatttgtgtaaggaatagtttccatattt |
29941415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 903958 - 903896
Alignment:
| Q |
211 |
cctaatctcttaaaaattgaagaaaat-aagaaaacccattaaagttagctcctttggaaccc |
272 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||| |||| ||||||||||| |
|
|
| T |
903958 |
cctaatctcttagaaattgaagaaaatgaagaaaacacattaaagctagcatctttggaaccc |
903896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 904366 - 904315
Alignment:
| Q |
16 |
atcaaatgtgttcgcttcgtgtaaggaatagtttccatatttccaaaataca |
67 |
Q |
| |
|
|||||||| |||||||| || ||||||| |||||||||||| |||||||||| |
|
|
| T |
904366 |
atcaaatgcgttcgctttgtataaggaacagtttccatattcccaaaataca |
904315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6481 times since January 2019
Visitors: 5768