View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_19 (Length: 335)

Name: NF0825_low_19
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_19
NF0825_low_19
[»] chr5 (8 HSPs)
chr5 (98-253)||(1044381-1044536)
chr5 (98-247)||(1053639-1053788)
chr5 (100-247)||(1033996-1034143)
chr5 (115-242)||(1071740-1071867)
chr5 (115-253)||(1066013-1066151)
chr5 (115-247)||(1058921-1059053)
chr5 (97-244)||(1046966-1047113)
chr5 (107-247)||(1640413-1640553)
[»] scaffold0001 (1 HSPs)
scaffold0001 (122-204)||(65855-65937)
[»] chr3 (1 HSPs)
chr3 (139-204)||(12121338-12121403)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 1044381 - 1044536
Alignment:
Q  98 gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044381 gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag 1044480  T
Q  198 atttgcacttaatgctcctctcaacaagtataatagggagacattctacatctctg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1044481 atttgcacttaatgctcctctcaacaagtataatagggagacattctacatttctg 1044536  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 1053639 - 1053788
Alignment:
Q  98 gctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagag 197  Q
    ||||||| |||||||| || ||| |||||||||||||||| | |||||||||| | | |||||||||||||||| || | ||||||||||| ||||||||    
T  1053639 gctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagag 1053738  T
Q  198 atttgcacttaatgctcctctcaacaagtataatagggagacattctaca 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1053739 atttgcacttaatgctcctcttaacaagtataatagggagacattctaca 1053788  T

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Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 1033996 - 1034143
Alignment:
Q  100 tatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagat 199  Q
    |||||||||||||| |||||| |||||||||| || || | |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  1033996 tatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagat 1034095  T
Q  200 ttgcacttaatgctcctctcaacaagtataatagggagacattctaca 247  Q
    ||||||| || ||||||||||| || ||||| ||||||||||||||||    
T  1034096 ttgcactaaacgctcctctcaataaatataacagggagacattctaca 1034143  T

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Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 1071740 - 1071867
Alignment:
Q  115 gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc 214  Q
    |||||| |||| ||||||||||||| |||||| || || || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  1071740 gggatcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctc 1071839  T
Q  215 ctctcaacaagtataatagggagacatt 242  Q
    |||| ||||||||||| |||||||||||    
T  1071840 ctctaaacaagtataacagggagacatt 1071867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 1066013 - 1066151
Alignment:
Q  115 gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc 214  Q
    |||||| |||| ||||||||||||| |||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||    
T  1066013 gggatcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctc 1066112  T
Q  215 ctctcaacaagtataatagggagacattctacatctctg 253  Q
    |||| ||||| ||||| |||||||| |||||||| ||||    
T  1066113 ctctgaacaaatataacagggagacgttctacatttctg 1066151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 1058921 - 1059053
Alignment:
Q  115 gggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctc 214  Q
    |||||| |||| ||||||||||| | | |||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  1058921 gggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctc 1059020  T
Q  215 ctctcaacaagtataatagggagacattctaca 247  Q
    |||| ||||||||||| |||| |||||||||||    
T  1059021 ctctaaacaagtataacagggcgacattctaca 1059053  T

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Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 1046966 - 1047113
Alignment:
Q  97 agctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaaga 196  Q
    |||||||| |||| |||||||||| |||||||||||||||| | || ||||||||| | ||| |  ||||| ||| |||| |||||||||||||||||||    
T  1046966 agctatgaaagactagacgggatcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaaga 1047065  T
Q  197 gatttgcacttaatgctcctctcaacaagtataatagggagacattct 244  Q
    ||||||||||||||||||| || ||||||||||||| |||||||||||    
T  1047066 gatttgcacttaatgctcccctaaacaagtataatatggagacattct 1047113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 1640553 - 1640413
Alignment:
Q  107 gacaagacgggatcgatgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcact 206  Q
    ||||||| ||||| ||||| |||| |||||| ||| |||||||||| | ||||||||| |||||  || | ||||||||||| ||||||||||| || ||    
T  1640553 gacaagatgggattgatgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgct 1640454  T
Q  207 taatgctcctctcaacaagtataatagggagacattctaca 247  Q
      ||||||||||||||||||||||  |||| ||||||||||    
T  1640453 cgatgctcctctcaacaagtataaccgggaaacattctaca 1640413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 65855 - 65937
Alignment:
Q  122 atgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca 204  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  65855 atgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca 65937  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 12121403 - 12121338
Alignment:
Q  139 aaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgca 204  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  12121403 aaggcagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca 12121338  T

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