View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_2 (Length: 517)
Name: NF0825_low_2
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 45976265 - 45975853
Alignment:
| Q |
1 |
tagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatattaattatctacacacaccacaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45976265 |
tagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatatcaattatctacacacaccacaaag |
45976166 |
T |
|
| Q |
101 |
ctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccaccaatgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976165 |
ctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccaccaatgggaa |
45976066 |
T |
|
| Q |
201 |
gtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976065 |
gtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataata |
45975966 |
T |
|
| Q |
301 |
tacacactcagaatagcaacaacataataaggaaaaaagt---gattatattgaagaatactactatatataccccatatttatggcaacaagttttccc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975965 |
tacacactcagaatagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaagttttccc |
45975866 |
T |
|
| Q |
398 |
agttgttcaacaa |
410 |
Q |
| |
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| T |
45975865 |
agttgttcaacaa |
45975853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 28022808 - 28022705
Alignment:
| Q |
404 |
tcaacaatgagagtaactgtttctgtttcatctccgcacaaagcatagaatccaatccttttctcattatccaactctatacccttgtaccagagatttt |
503 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28022808 |
tcaacaatgagagtaactgtttctgtttcatctccgcgcaaagcatagaatccaatccttttctcattatccaactctatacccttgtaccagagatttt |
28022709 |
T |
|
| Q |
504 |
gcct |
507 |
Q |
| |
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|||| |
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| T |
28022708 |
gcct |
28022705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 28052311 - 28052450
Alignment:
| Q |
143 |
accttgaagagaatcgctcgatgcctacaaagaccagaagatagaccaccaatgggaagtacaacacacttgtgaaaattcctcaacctcttactaacca |
242 |
Q |
| |
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|||||||||||||| || ||||||||||| || || | || | | ||||| ||||| |||||||||| |||||||||||||||| ||||||||||| |
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| T |
28052311 |
accttgaagagaattgcgcgatgcctacagagtcccgtggacaaattaccaactggaagcacaacacactgatgaaaattcctcaaccgcttactaacca |
28052410 |
T |
|
| Q |
243 |
acttccactgtttgtggagatctcctcgctccaccgggaa |
282 |
Q |
| |
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||||||| ||| || ||||||||| ||||||| ||||| |
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| T |
28052411 |
tcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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