View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_20 (Length: 324)
Name: NF0825_low_20
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 51705003 - 51705282
Alignment:
| Q |
16 |
atagacacacaagcaagttaattgagtgtatgaagaaaaatgagtcacgttgaaagtggagcgaagttattggctacactagcacttgctctctttcatc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705003 |
atagacacacaagcaagttaattgagtgtatgaagaaaaatgagtcaagttgaaactggagcgaagttattggctacactagcacttgctctctttcatc |
51705102 |
T |
|
| Q |
116 |
ttcttccagtaaaccctacattgtccgaatttaaccgtcaccgtgaaattacattgttagaggaacacttaactgctgcggaaaccactgttagagtggt |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51705103 |
ttcttccagtaacccctacattgtccgaatttaaccgtcaccgtgaaattacattgttagaggaacacttaactgctgcggaaaccaccgttagagtggt |
51705202 |
T |
|
| Q |
216 |
cagagttcggaaagacggaaccggagattttacgacggtgacggatgccgttaaaagcattccgtcaggaaacaaaagga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705203 |
cagagttcggaaagacggaaccggagattttacgacggtgacggatgccgttaaaagcattccgtcaggaaacaaaagga |
51705282 |
T |
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