View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_22 (Length: 320)

Name: NF0825_low_22
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_22
NF0825_low_22
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-236)||(164992-165227)
[»] chr6 (3 HSPs)
chr6 (1-236)||(14248499-14248734)
chr6 (10-121)||(14317161-14317272)
chr6 (144-222)||(14317087-14317165)
[»] scaffold0902 (1 HSPs)
scaffold0902 (1-222)||(3629-3841)
[»] scaffold1652 (1 HSPs)
scaffold1652 (43-222)||(1-180)
[»] scaffold1176 (1 HSPs)
scaffold1176 (32-146)||(1206-1320)
[»] chr4 (1 HSPs)
chr4 (1-163)||(37245288-37245450)


Alignment Details
Target: scaffold0002 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 164992 - 165227
Alignment:
Q  1 atctttcttctatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcccccca 100  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164992 atctttctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcccccca 165091  T
Q  101 gtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtct 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165092 gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtct 165191  T
Q  201 gcttcctctggttctcctgctgtcgctccatcctgg 236  Q
    |||| |||||||||||||||||||||||||||||||    
T  165192 gctttctctggttctcctgctgtcgctccatcctgg 165227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14248734 - 14248499
Alignment:
Q  1 atctttcttctatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcccccca 100  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248734 atctttctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcccccca 14248635  T
Q  101 gtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtct 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248634 gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtct 14248535  T
Q  201 gcttcctctggttctcctgctgtcgctccatcctgg 236  Q
    |||| |||||||||||||||||||||||||||||||    
T  14248534 gctttctctggttctcctgctgtcgctccatcctgg 14248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 14317272 - 14317161
Alignment:
Q  10 ctatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctcc 109  Q
    |||||||||||||  | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  14317272 ctatggcttcttccaaaacagctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcacccaagtcttctcc 14317173  T
Q  110 gtttccatcacc 121  Q
    ||||||||||||    
T  14317172 gtttccatcacc 14317161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 14317165 - 14317087
Alignment:
Q  144 tcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg 222  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14317165 tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg 14317087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3841 - 3629
Alignment:
Q  1 atctttcttctatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcccccca 100  Q
    |||||||| |||||||||||||  | |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||         |||||| |    
T  3841 atctttctactatggcttcttccaaaaccgctgtgttgatgcttttggttgcactgttgctgagttccgccgttgctagatca---------tcccccaa 3751  T
Q  101 gtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtct 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||  ||    
T  3750 gtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctcttcttcaccaact 3651  T
Q  201 gcttcctctggttctcctgctg 222  Q
    ||||| ||||||||||| ||||    
T  3650 gcttcatctggttctcccgctg 3629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 1 - 180
Alignment:
Q  43 ttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctctgctga 142  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1 ttttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctga 100  T
Q  143 ctcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg 222  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||| ||| | || ||||||| ||||||||||| ||||    
T  101 ctcaccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctg 180  T

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Target: scaffold1176 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 1206 - 1320
Alignment:
Q  32 tgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttct 131  Q
    |||||||||||||||||||||||||||||| |||| | | ||||||  ||||||| || |||||||| ||||||||||||||||||| ||||| ||||||    
T  1206 tgtgttgatgcttttggttgcactgtttctaagtttcaccgttgcttaatcaccatcaacatcccccaagtcttctccgtttccatctcctgcgatttct 1305  T
Q  132 ccctctgctgactca 146  Q
    ||||| ||| |||||    
T  1306 ccctcagctaactca 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 37245450 - 37245288
Alignment:
Q  1 atctttcttctatggcttcttctcacaccgctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatc--cccc 98  Q
    |||||||| |||||||||| |   |||||| |||| |||||||||||||||||||| | |||  |||| | |||||||||||||||||||||||  | ||    
T  37245450 atctttctactatggcttcct---acaccgttgtgctgatgcttttggttgcactgctgctggattccacagttgctcgatcaccaccatcatcatcgcc 37245354  T
Q  99 ca-gtcttctccgtttccatcacctgctatttctccctctgctgactcacaagtggcgtcttctcc 163  Q
    || || ||||||||||||||||||    ||||||||||| ||| |||||| |||||| ||| ||||    
T  37245353 catgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc 37245288  T

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