View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_24 (Length: 306)
Name: NF0825_low_24
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 40938742 - 40939005
Alignment:
| Q |
13 |
aatataacaaataaggtgtaattgagacaattttaaagggaataatagaaaaatatcattaataatttattggaattgtaaagtgacttaaaaatgannn |
112 |
Q |
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| T |
40938742 |
aatataacaaataaggtgtaattgagacaattttaaagggtataatagaaaaatatcattaataatttattggaattgtaaagtgacttaaaaatgattt |
40938841 |
T |
|
| Q |
113 |
nnnnnnnctaaaacaatttataattttagaaggagaataactactattttgaacaaatttaaccataacaactgaattttttcaaaatttaaatttaaat |
212 |
Q |
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| T |
40938842 |
tttttt-ctaaaacaatttataattttagaaggagaataactacttttttaaacaaatttaaccataacaactgaattttttcaaaatttaaatttaaat |
40938940 |
T |
|
| Q |
213 |
ctacatcgtaatcacatattgttacaaatctaaacattttattgtcgcatgttacatgctcgtgt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40938941 |
ctacatcgtaatcacatattgttacaaatctaaacattttattgtcgcatgttacatgctcgtgt |
40939005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 12598328 - 12598287
Alignment:
| Q |
57 |
atagaaaaatatcattaataatttattggaattgtaaagtga |
98 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
12598328 |
atagaaaaataacattaatattttattggtattgtaaagtga |
12598287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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