View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_28 (Length: 281)

Name: NF0825_low_28
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_28
NF0825_low_28
[»] chr1 (5 HSPs)
chr1 (1-241)||(47523930-47524170)
chr1 (8-80)||(43866458-43866530)
chr1 (5-102)||(33966895-33966994)
chr1 (1-103)||(18990085-18990187)
chr1 (1-104)||(50204763-50204866)
[»] chr8 (9 HSPs)
chr8 (1-103)||(29168252-29168354)
chr8 (1-102)||(1548400-1548501)
chr8 (1-103)||(3376074-3376176)
chr8 (3-103)||(23033640-23033740)
chr8 (3-103)||(34784243-34784343)
chr8 (3-103)||(3117968-3118068)
chr8 (3-103)||(20901031-20901132)
chr8 (43-103)||(3277750-3277810)
chr8 (2-43)||(1469163-1469204)
[»] chr6 (6 HSPs)
chr6 (1-103)||(13425443-13425545)
chr6 (5-94)||(23889796-23889885)
chr6 (5-94)||(18133656-18133745)
chr6 (1-103)||(25100780-25100883)
chr6 (20-103)||(10875612-10875695)
chr6 (1-78)||(6539314-6539391)
[»] chr4 (8 HSPs)
chr4 (1-103)||(39598853-39598955)
chr4 (1-102)||(2588236-2588337)
chr4 (3-103)||(16497454-16497554)
chr4 (1-103)||(49577306-49577408)
chr4 (1-103)||(4289823-4289925)
chr4 (7-102)||(5650486-5650581)
chr4 (20-103)||(11157107-11157190)
chr4 (1-103)||(55911397-55911499)
[»] chr2 (13 HSPs)
chr2 (1-103)||(44673424-44673526)
chr2 (3-108)||(25438554-25438659)
chr2 (1-103)||(36536126-36536228)
chr2 (8-103)||(37154590-37154685)
chr2 (20-103)||(33391759-33391842)
chr2 (2-96)||(41714894-41714988)
chr2 (48-102)||(26377615-26377669)
chr2 (20-103)||(21005775-21005858)
chr2 (20-103)||(39573913-39573996)
chr2 (5-43)||(26377587-26377625)
chr2 (20-103)||(6537162-6537245)
chr2 (1-104)||(42975600-42975703)
chr2 (1-103)||(950490-950592)
[»] chr5 (7 HSPs)
chr5 (1-103)||(7992132-7992234)
chr5 (1-102)||(28276967-28277068)
chr5 (1-78)||(41106785-41106862)
chr5 (1-103)||(41377584-41377678)
chr5 (29-92)||(10916858-10916921)
chr5 (20-103)||(28828226-28828309)
chr5 (1-62)||(5240704-5240765)
[»] chr3 (6 HSPs)
chr3 (1-103)||(7227335-7227437)
chr3 (3-108)||(7323101-7323206)
chr3 (3-103)||(53208430-53208530)
chr3 (3-102)||(32130421-32130520)
chr3 (1-103)||(9454879-9454981)
chr3 (5-103)||(50064131-50064229)
[»] chr7 (8 HSPs)
chr7 (3-103)||(32775429-32775529)
chr7 (1-103)||(12858970-12859072)
chr7 (3-103)||(19886830-19886930)
chr7 (3-103)||(36167473-36167573)
chr7 (1-103)||(46082204-46082311)
chr7 (22-102)||(5465442-5465519)
chr7 (44-103)||(11599455-11599514)
chr7 (1-103)||(19780832-19780934)
[»] scaffold0302 (1 HSPs)
scaffold0302 (15-103)||(17361-17449)
[»] scaffold0325 (1 HSPs)
scaffold0325 (5-103)||(8606-8705)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 47523930 - 47524170
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47523930 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 47524029  T
Q  101 attcgtgaagatggttatacattctgacattggattcaacttcagtagtaagtgctattattgcctctgtcttcatcatcatcagggccaggccaaggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47524030 attcgtgaagatggttatacattctgacattggattcaacttcagtagtaagtgctattatttcctctgtcttcatcatcatcagggccaggccaaggtt 47524129  T
Q  201 tcatctgttctgcagaattacgtaccggttgtagcaacagc 241  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  47524130 tcatctgttctgcagaattaggtaccggttgtagcagcagc 47524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 43866458 - 43866530
Alignment:
Q  8 ctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacat 80  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||| |||||||||    
T  43866458 ctactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttaattggccgaccaatcctacat 43866530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 33966895 - 33966994
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacatag--gatctcgatcctgactacat 102  Q
    |||||||||||||||||||||||| ||||||| ||||| |  ||||||||| |||||||||| || |||||||| |||  ||||||  ||||||||||||    
T  33966895 aacctaccgatcctacttacgaactgtgttacattcctcgcttttacgttccttcaccggcctactgatcctacgtaggagatctcagtcctgactacat 33966994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 18990187 - 18990085
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||| || ||| |||| ||||| |||||| || ||||||||| ||||||||||| || | ||||| | ||||||| ||||| |||||    
T  18990187 caacaacctaccgatccaacatacaaaccatgttatgttcctcgtatttacgttccttcaccggccgtcctaccctacgtgggatctcaatcctaactac 18990088  T
Q  101 att 103  Q
    |||    
T  18990087 att 18990085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50204763 - 50204866
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||| |||| |||||||||| |||||||||  |||  |||||||  ||||||||| ||| ||||||||||| ||  | ||||| |||||||||    
T  50204763 caacaacctactgatcttacttacgaagcgtgttacgaccctcatgtttacaatctttcaccagcctaccgatcctacttaaaaactcgaacctgactac 50204862  T
Q  101 attc 104  Q
    ||||    
T  50204863 attc 50204866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29168354 - 29168252
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  29168354 caacaacctaccgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcaccggccgaccgatcctatgtaggatctctatcctgactac 29168255  T
Q  101 att 103  Q
    |||    
T  29168254 att 29168252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1548400 - 1548501
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  1548400 caacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactac 1548499  T
Q  101 at 102  Q
    ||    
T  1548500 at 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3376176 - 3376074
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||| |||||||| ||||||||||||    
T  3376176 caacaacctaccgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcatcggcggaccgaacctacgtaggatcttgatcctgactac 3376077  T
Q  101 att 103  Q
    |||    
T  3376076 att 3376074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 23033640 - 23033740
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||    
T  23033640 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacat 23033739  T
Q  103 t 103  Q
    |    
T  23033740 t 23033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 34784343 - 34784243
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  34784343 acaacctaacgatcctacttacaaaccgtgttacgttcctcgtgtttatgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 34784244  T
Q  103 t 103  Q
    |    
T  34784243 t 34784243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 3117968 - 3118068
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||| ||||||||||||    
T  3117968 acaacctatcgatcctacttacgaaccatgttacgttcctcgtgtttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacat 3118067  T
Q  103 t 103  Q
    |    
T  3118068 t 3118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 20901031 - 20901132
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcg-atcctgactaca 101  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||  |||||||||||    
T  20901031 acaacctattgatcccacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgtttcctgactaca 20901130  T
Q  102 tt 103  Q
    ||    
T  20901131 tt 20901132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 3277750 - 3277810
Alignment:
Q  43 tgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||    
T  3277750 tgtgtttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacatt 3277810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 1469163 - 1469204
Alignment:
Q  2 aacaacctaccgatcctacttacgaaccgtgttacgttcctt 43  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  1469163 aacaacctaccgatcctacttacggaccgtgtttcgttcctt 1469204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13425545 - 13425443
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  13425545 caacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactac 13425446  T
Q  101 att 103  Q
    |||    
T  13425445 att 13425443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 23889885 - 23889796
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcct 94  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| |||| | ||||| |||||||||    
T  23889885 aacctaccgatcctactaacgaaccgtgttacgttcctcgtgttttcgttctttcaccggccgaccggtcctccgtaggacctcgatcct 23889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 18133745 - 18133656
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcct 94  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||| |||| | ||||| |||||||||    
T  18133745 aacctaccgatcctacttatgaaccgtgttacgttcctcgtgttttcgttcattcaccggccgaccggtcctccgtaggacctcgatcct 18133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 25100883 - 25100780
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgtta-cgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgacta 99  Q
    |||||||||||||||||||||||||||| |||||| ||||||| || |||| |||| |||||||||||||| ||||||  |||||||| |||||| ||||    
T  25100883 caacaacctaccgatcctacttacgaactgtgttaacgttcctcgtttttatgttccttcaccggccgaccaatcctatgtaggatcttgatcctaacta 25100784  T
Q  100 catt 103  Q
    ||||    
T  25100783 catt 25100780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 10875612 - 10875695
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||||||||||||| || ||| |||||||||||| | || ||||||||||| ||||| |||||||||||||| ||| |||||    
T  10875612 cttacgaaccgtgttatgtccctcgtgtttacgttcctacatcggccgaccgaacctacgtaggatctcgatcccgaccacatt 10875695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6539391 - 6539314
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctac 78  Q
    ||||||| ||||||||||||||||||||| ||| | ||||||  ||||||||||| |||||| ||| |||||||||||    
T  6539391 caacaacttaccgatcctacttacgaaccatgtaatgttcctaatgtttacgttccttcaccagcctaccgatcctac 6539314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39598955 - 39598853
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  39598955 caacaacctaccgatcctacttacgaacagtgctacgttcctcgtgtttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactac 39598856  T
Q  101 att 103  Q
    |||    
T  39598855 att 39598853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2588337 - 2588236
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  2588337 caacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactac 2588238  T
Q  101 at 102  Q
    ||    
T  2588237 at 2588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 16497554 - 16497454
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  16497554 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 16497455  T
Q  103 t 103  Q
    |    
T  16497454 t 16497454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 49577408 - 49577306
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  49577408 caacaacctaccgatcctacttatgaactgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcctacgtaggatctcgatcatgactac 49577309  T
Q  101 att 103  Q
    |||    
T  49577308 att 49577306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4289925 - 4289823
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||||||||||| ||||||||    
T  4289925 caacaacctaccgatcctacttacgaaccgggttacgttcctcgtgtttaagttctttcaacggccaaccgatcctacgtaggatctcgatactgactac 4289826  T
Q  101 att 103  Q
    |||    
T  4289825 att 4289823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 5650581 - 5650486
Alignment:
Q  7 cctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||    
T  5650581 cctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 11157107 - 11157190
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||| |||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  11157107 cttatgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 11157190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55911397 - 55911499
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||  || |||||||||  ||   |||||| | | ||||||| ||| ||| ||||||| ||| | ||||| |||||||||    
T  55911397 caacaacctaccgatcctacttataaatcgtgttacgacccacatgtttatgatatttcaccagcctaccaatcctacttagaaactcgaacctgactac 55911496  T
Q  101 att 103  Q
    |||    
T  55911497 att 55911499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44673424 - 44673526
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  44673424 caacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactac 44673523  T
Q  101 att 103  Q
    |||    
T  44673524 att 44673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 25438554 - 25438659
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  25438554 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 25438653  T
Q  103 tcgtga 108  Q
    | ||||    
T  25438654 tggtga 25438659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36536228 - 36536126
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||||| ||||||| |||||||||||| ||||||||    
T  36536228 caacaacctaccgatcctacttacaaaccgtgttacgtgccttgtgtttactttctttcactggccgaccaatcctacgtaggatctcgattctgactac 36536129  T
Q  101 att 103  Q
    |||    
T  36536128 att 36536126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 37154685 - 37154590
Alignment:
Q  8 ctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||  || |||||| |||| ||||||||||||| ||||||||||    
T  37154685 ctactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccaaccaaccgattctacgtaggatctcgatcttgactacatt 37154590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 33391842 - 33391759
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||||||||||| ||||||  |||||||| |||||||||||||||    
T  33391842 cttacaaaccgtgttacgttcctcgtgtttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacatt 33391759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 41714988 - 41714894
Alignment:
Q  2 aacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctga 96  Q
    ||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||| |||  | ||| ||| ||| |||||||||||||||||    
T  41714988 aacaacctaccaatcctacttacaaatcgtgttatgttccttgtgtttacgttctttcgccgaacaaccaatcatacgtaggatctcgatcctga 41714894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 26377615 - 26377669
Alignment:
Q  48 ttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||||||||||    
T  26377615 ttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacat 26377669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 21005858 - 21005775
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  21005858 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 21005775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 39573996 - 39573913
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  39573996 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 39573913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 26377587 - 26377625
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttcctt 43  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  26377587 aacctacctatcctacttacgaaccgtgttacgttcctt 26377625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 6537162 - 6537245
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    ||||||||||||||||||||||  |  ||||||| | |||||| ||||| ||| ||||| || || |||| |||||||||||||    
T  6537162 cttacgaaccgtgttacgttccccgactttacgtcccttcaccagccgatcgaacctacgtaagaactcgttcctgactacatt 6537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 42975703 - 42975600
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||||||||||||||  || |||||||||  ||| ||||||||  ||||| ||| ||| ||| ||||||| ||  | ||| | |||||||||    
T  42975703 caacaacctaccgatcctacttataaatcgtgttacgaccctcgtgtttacaatcttttaccagcctaccaatcctacttaaaaactctaacctgactac 42975604  T
Q  101 attc 104  Q
    ||||    
T  42975603 attc 42975600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 950592 - 950490
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||| ||||||||||||||  ||||||||  ||| |||||| || || || ||| ||| ||||||||||| ||  | || || |||||||||    
T  950592 caacaacctaccaatcctacttacgaattgtgttacgaccctcgtgtttgcgatcatttaccagcctaccgatcctacttaaaaacttgaacctgactac 950493  T
Q  101 att 103  Q
    |||    
T  950492 att 950490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7992234 - 7992132
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||    
T  7992234 caacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcatgactac 7992135  T
Q  101 att 103  Q
    |||    
T  7992134 att 7992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28276967 - 28277068
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||  |||||||||||||||| ||||||||||||| || |||||||||||||||||||| | ||||||||| ||||||||| |||||||||||    
T  28276967 caacaacctattgatcctacttacgaactgtgttacgttcctcgtatttacgttctttcaccggccaatcgatcctacgtaggatctcaatcctgactac 28277066  T
Q  101 at 102  Q
    ||    
T  28277067 at 28277068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41106785 - 41106862
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctac 78  Q
    ||||||||||| ||||||||||||||| ||||||| |  ||||||||||||  ||||||||| ||| || ||||||||    
T  41106785 caacaacctacggatcctacttacgaatcgtgttatggcccttgtgtttacaatctttcaccagcctactgatcctac 41106862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41377678 - 41377584
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||||| ||||||||||| || |||||||||||||| ||||        ||||||| || ||||| |||||| |||||| ||||||||||||||    
T  41377678 caacaacctaccaatcctacttacaaatcgtgttacgttcctcgtgt--------tttcaccagctgaccggtcctacttaggatatcgatcctgactac 41377587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 10916921 - 10916858
Alignment:
Q  29 cgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatc 92  Q
    |||||||||||||| ||||||| |||||||||||||||||   || |||| |||||||||||||    
T  10916921 cgtgttacgttcctcgtgtttatgttctttcaccggccgattaattctacgtaggatctcgatc 10916858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 28828226 - 28828309
Alignment:
Q  20 cttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    ||||||||||||||||||||||  |  ||||||| | |||||||||||| ||| ||||| ||| | |||| |||||||||||||    
T  28828226 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacatt 28828309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5240704 - 5240765
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcacc 62  Q
    ||||||||||| ||||||||||| ||||| |||||| | ||| |||||||  ||||||||||    
T  5240704 caacaacctactgatcctacttatgaaccatgttacatccctcgtgtttaaattctttcacc 5240765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7227335 - 7227437
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7227335 caacaacctaccgatcctaattacgaaccgtggtacattcctcgtgtttacgttctttcaccggacgactgatcctacataggatctcgatcctgactac 7227434  T
Q  101 att 103  Q
    |||    
T  7227435 att 7227437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 7323101 - 7323206
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||    
T  7323101 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaacttgttcctgactacat 7323200  T
Q  103 tcgtga 108  Q
    | ||||    
T  7323201 tggtga 7323206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 53208530 - 53208430
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  53208530 acaacctatcgatcctacttatgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 53208431  T
Q  103 t 103  Q
    |    
T  53208430 t 53208430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 32130421 - 32130520
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  32130421 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacat 32130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9454879 - 9454981
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||    
T  9454879 caacaacctaccgatcctacttacgaaccgtgttacactcctcgtggttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactac 9454978  T
Q  101 att 103  Q
    |||    
T  9454979 att 9454981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 50064131 - 50064229
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||||||||||||||||||||||| ||  ||||||| || ||||| ||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  50064131 aacctaccgatcctacttacgaaccgcgtctcgttcctcgtttttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacatt 50064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 32775429 - 32775529
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |||| ||||||||||||    
T  32775429 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacat 32775528  T
Q  103 t 103  Q
    |    
T  32775529 t 32775529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12859072 - 12858970
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  12859072 caacaacctatcgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcaccggccgaccgatgctacgtaggaactcgttcctgactac 12858973  T
Q  101 att 103  Q
    |||    
T  12858972 att 12858970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 19886830 - 19886930
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| |||| ||||||||||||    
T  19886830 acaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgctggaactcgttcctgactacat 19886929  T
Q  103 t 103  Q
    |    
T  19886930 t 19886930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 36167573 - 36167473
Alignment:
Q  3 acaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||| ||||||||||||    
T  36167573 acaacctatcaatcctacttacgaaccgtgttacgttcctcgtgtttacattctttcaccggccaaccgatcctacgtaggaactcgttcctgactacat 36167474  T
Q  103 t 103  Q
    |    
T  36167473 t 36167473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 46082311 - 46082204
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccga-----ccgatcctacataggatctcgatcctg 95  Q
    |||||||||| | ||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||     |||||||||| |||||||| |||||||    
T  46082311 caacaacctagcaatcctacatatgaaccgtgttacgttccttgtgtttacgttccttcaccggctgaccgatccgatcctacttaggatcttgatcctg 46082212  T
Q  96 actacatt 103  Q
    ||||||||    
T  46082211 actacatt 46082204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 5465519 - 5465442
Alignment:
Q  22 tacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacat 102  Q
    |||||||| |||||||||||||||||||||||||||||||| | ||| |||||||   ||||||||||||||| |||||||    
T  5465519 tacgaaccatgttacgttccttgtgtttacgttctttcaccagtcgaacgatcct---taggatctcgatcctaactacat 5465442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 11599514 - 11599455
Alignment:
Q  44 gtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  11599514 gtgtttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacatt 11599455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19780934 - 19780832
Alignment:
Q  1 caacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactac 100  Q
    |||||| ||||| |||||||||||||| ||||||| |  ||| ||||||||| ||||||||| ||| || |||| ||| ||  | ||||| |||||||||    
T  19780934 caacaagctacctatcctacttacgaatcgtgttaagaccctcgtgtttacgatctttcaccagcctactgatcatacttaaaaactcgaacctgactac 19780835  T
Q  101 att 103  Q
    |||    
T  19780834 att 19780832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 17361 - 17449
Alignment:
Q  15 tcctacttacgaaccgtgttacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||| ||||||||||||||||| ||||||    
T  17361 tcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacctgccggcagatcctacgtaggatctcgatcctgattacatt 17449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 8606 - 8705
Alignment:
Q  5 aacctaccgatcctacttacgaaccgtgttacgttccttgtgttt-acgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 103  Q
    |||||| |||||||| |||| |||||||| |||||||| |||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8606 aacctaacgatcctatttacaaaccgtgtcacgttcctcgtgttttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacatt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5974 times since January 2019
Visitors: 5761