View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825_low_29 (Length: 280)
Name: NF0825_low_29
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_29 |
 | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 51498970 - 51498774
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51498970 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
51498871 |
T |
|
| Q |
141 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51498870 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacag |
51498774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 51482269 - 51482076
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51482269 |
atgaactcagcacaatgacgaggcaaactttccctaaataaattagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatctgggc |
51482170 |
T |
|
| Q |
141 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaa |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51482169 |
gaccatttgtgtacccagtaaagaattggtgcacattaatatttccctgcattcattcaacaactcaaataaaaattgcagaaattacaggcaa |
51482076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 30205198 - 30205394
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| || || |
|
|
| T |
30205198 |
atgaactcagcacaatgacggggcaaactttcctcaaataaattagaaggaggccaatctttcagtttcaaaaccttaggccaattaagccagtccagga |
30205297 |
T |
|
| Q |
141 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacag |
237 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
30205298 |
gaccctttgtgtacccagtaaagaatttgtgcaaattaatatctccctgcattcaatcaacacctcagataaaaattgcagaaattactggcaacag |
30205394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 51457625 - 51457430
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
140 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||| | |||||| | ||||||||||||||||||||||||||| |||| |||||| ||||||||||| || |
|
|
| T |
51457625 |
atgaactcagcatgatgacgaggtaaaagttcctgaaataaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgc |
51457526 |
T |
|
| Q |
141 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacag |
237 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
51457525 |
gaccatttgtgtacccagtgaagaattggtggatattaatatctccctgcattcaatgaacaactcaaataaaaa-tgcagaaattaccagcaacag |
51457430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 51440068 - 51439982
Alignment:
| Q |
152 |
tacccagtaaagaattggtgcacatt--aatatctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacag |
237 |
Q |
| |
|
||||||||||| |||||||| | ||| |||| ||||||| ||||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
51440068 |
tacccagtaaataattggtggatattttaataattccctgcgttcaatcaacaactccaataaaaa-tgcagaaattaccagcaacag |
51439982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 27397613 - 27397441
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggc |
140 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| | | ||| | |
|
|
| T |
27397613 |
atgaactccgcacaatgacgcggtaaactttcttcaaatagtttagaaggaggccaatctttcaatttcaatacttgaggccaatcatgtttatccttgg |
27397514 |
T |
|
| Q |
141 |
gaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaa |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||| |
|
|
| T |
27397513 |
gacaatttgtgtacccagtaaagaattggtgcacattaatatctatctgcatcggatcaaaaactcaaataaa |
27397441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 43161949 - 43161767
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatc----- |
135 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||| | |||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||| || |
|
|
| T |
43161949 |
atgaactcagcatgatgacgaggtaaacgttcctgaaataaatcagaaggaggccaatctttcaatttcaacacctcaggccaattaagccagtccttgc |
43161850 |
T |
|
| Q |
136 |
-ag-ggcgaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattcaatcaacaactcagataaaaat |
216 |
Q |
| |
|
|| |||||| ||||||| ||||| |||||| |||| | |||||| |||| ||||||||||| ||||||| | |||||||| |
|
|
| T |
43161849 |
gagttgcgaccccttgtgtaaccagtgaagaatcggtggatattaatgtctctctgcattcaatgaacaactaaaataaaaat |
43161767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 20867770 - 20867900
Alignment:
| Q |
87 |
aaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggcgaccttttgtgtacccagtaaagaattggtgcacattaatatctcc |
186 |
Q |
| |
|
||||||||| ||| ||||||||||| | ||||||||||| |||| ||| |||||| ||||| |||||||||||||| | | ||| ||||||||||| |
|
|
| T |
20867770 |
aaggaggccgatcattcaatttcaatagctgaggccaatcaagcttatccttgcgaccatttgtatacccagtaaagaaatcatccactttaatatctcc |
20867869 |
T |
|
| Q |
187 |
ctgcattcaatcaacaactcagataaaaatt |
217 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||| |
|
|
| T |
20867870 |
ctgcattgaatcaacaagtcaaataaaaatt |
20867900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 136439 - 136569
Alignment:
| Q |
96 |
aatctttcaatttcaaaacctgaggccaattaagccaatcagggcgaccttttgtgtacccagtaaagaattggtgcacattaatatctccctgcattca |
195 |
Q |
| |
|
|||||||||||||||| | ||| ||||||| ||| ||| |||||| ||||||||||| ||||||| | || ||||||||||| |||||||||| | |
|
|
| T |
136439 |
aatctttcaatttcaatagctgtggccaatcgagcttatccttgcgaccatttgtgtacccgctaaagaaatcgttcacattaatatttccctgcattta |
136538 |
T |
|
| Q |
196 |
atcaacaactcagataaaaattgcagaaatta |
227 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |
|
|
| T |
136539 |
atcaacaactcgaataaaaatt-cagaaatta |
136569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 4299543 - 4299471
Alignment:
| Q |
41 |
atgaactcagcacaatgacgaggcaaactttcttcaaataagttagaaggaggccaatctttcaatttcaaaacct |
116 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
4299543 |
atgaactcggcacaatgacggggaaaactttcctcaaataa---actaggaggccaatctttcagtttcaaaacct |
4299471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5424 times since January 2019
Visitors: 5757