View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825_low_3 (Length: 512)
Name: NF0825_low_3
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 25431021 - 25431437
Alignment:
| Q |
11 |
cacagagtagttggttctttataatgtaagtgtatcccttatgctatnnnnnnnngctagaagacagcagcgagcctatgatcattgtaggttatcacaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
25431021 |
cacagagtagttggttctttataatgtaagtgtatcccttatgctataaaaaaaaattagaagacaacagcgagcctataatcattgtaggttatcacaa |
25431120 |
T |
|
| Q |
111 |
aacttggagcatacagactactcaacctgttaacaatgaacactgggactgaaaaacaaatgaatacaatgtctctactaagaacattgtaattgaagaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25431121 |
aacttggagcatacagactactcaacccgttaacaatgaacactgggactggaaaaaaaatgaatacaatgtctctactaagaacattgtaattgaagaa |
25431220 |
T |
|
| Q |
211 |
agccacacaaataaggagctcacaatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacaataatgtaaggtcacacagaaacaaa |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25431221 |
agccacacaaataaggagctcactatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacatcaatgtaaggtcacacagaaacaaa |
25431320 |
T |
|
| Q |
311 |
ctgattcc--taagactagtagattgacaacttacttctgatgatgagataggtagtgctggtgaactaatgaattttgcaatgctagtagatgtagaac |
408 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25431321 |
ctgattcctataagactagtagattgacaacttatttctgatgatgagataggtagtgatggtgaactaatgaattttgcaatgctagcagatgtagaac |
25431420 |
T |
|
| Q |
409 |
caatttattacataata |
425 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25431421 |
caatttattacataata |
25431437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4956 times since January 2019
Visitors: 5753