View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_30 (Length: 280)

Name: NF0825_low_30
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_30
NF0825_low_30
[»] chr4 (1 HSPs)
chr4 (59-243)||(56171813-56171999)
[»] chr2 (9 HSPs)
chr2 (59-179)||(17792480-17792599)
chr2 (126-191)||(15261474-15261539)
chr2 (92-157)||(20607340-20607405)
chr2 (118-203)||(27665601-27665686)
chr2 (92-210)||(27095680-27095798)
chr2 (92-209)||(33012053-33012170)
chr2 (164-202)||(40039360-40039398)
chr2 (92-209)||(44942261-44942378)
chr2 (103-202)||(25067835-25067934)
[»] chr1 (5 HSPs)
chr1 (103-192)||(31609735-31609823)
chr1 (103-203)||(18889058-18889158)
chr1 (102-157)||(31427182-31427237)
chr1 (106-203)||(38783050-38783147)
chr1 (92-202)||(42490876-42490986)
[»] chr7 (10 HSPs)
chr7 (93-200)||(39990203-39990309)
chr7 (103-201)||(4028168-4028264)
chr7 (92-200)||(36579340-36579448)
chr7 (114-178)||(43256599-43256663)
chr7 (90-203)||(5237936-5238050)
chr7 (92-210)||(28664940-28665058)
chr7 (93-203)||(45457585-45457695)
chr7 (92-203)||(9785299-9785410)
chr7 (132-192)||(23303503-23303563)
chr7 (162-210)||(24988452-24988500)
[»] chr3 (9 HSPs)
chr3 (92-193)||(5327512-5327613)
chr3 (92-192)||(4219175-4219273)
chr3 (92-203)||(31270308-31270419)
chr3 (103-209)||(13702019-13702125)
chr3 (92-209)||(34960894-34961011)
chr3 (92-197)||(49628123-49628228)
chr3 (103-210)||(11819058-11819165)
chr3 (168-203)||(29503332-29503368)
chr3 (168-203)||(51202418-51202454)
[»] chr6 (4 HSPs)
chr6 (126-201)||(15175797-15175872)
chr6 (126-201)||(15470296-15470371)
chr6 (133-203)||(7870151-7870221)
chr6 (92-203)||(21507836-21507947)
[»] chr8 (5 HSPs)
chr8 (119-199)||(10952323-10952403)
chr8 (119-199)||(10960328-10960408)
chr8 (104-191)||(19384338-19384425)
chr8 (165-203)||(17949126-17949165)
chr8 (92-203)||(37612635-37612746)
[»] chr5 (6 HSPs)
chr5 (92-151)||(374317-374376)
chr5 (165-203)||(10649328-10649367)
chr5 (92-210)||(17331303-17331421)
chr5 (102-150)||(26612049-26612097)
chr5 (92-176)||(39179856-39179939)
chr5 (92-203)||(43493854-43493965)
[»] scaffold0238 (1 HSPs)
scaffold0238 (126-200)||(15739-15813)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 56171999 - 56171813
Alignment:
Q  59 ataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  56171999 ataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcacttatttaactaaaagagaaataaaaat 56171900  T
Q  159 acttcggaggggtgatttcaggtcaaaattgacccaaaatcacccgtc--tgacggatcaaggaaaagaaaagttgcaacagctagg 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||| ||||    
T  56171899 acttcggagggatgatttcaggtcaaaattgacccaaaatcacccatctttgatggatcaaggaaaagaaaagttgcaacagttagg 56171813  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 17792599 - 17792480
Alignment:
Q  59 ataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaat 158  Q
    |||||||||||| ||  ||||||||| | |||||||| ||| | |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||     
T  17792599 ataaacaaagtcgtgctagatgacgaaatcacaaaaa-caaacgaaagaaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaagaaaaac 17792501  T
Q  159 acttcggaggggtgatttcag 179  Q
    | |  ||||||||||||||||    
T  17792500 aatatggaggggtgatttcag 17792480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 15261474 - 15261539
Alignment:
Q  126 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 191  Q
    |||| |||||||| |||||||||||| ||||| | |||||| |||||||||| |||||||||||||    
T  15261474 aatcacttatttagctaaaagagaaagaaaaacaattcggaagggtgatttcgggtcaaaattgac 15261539  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 20607340 - 20607405
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 157  Q
    |||||||| | |||||||||| ||||||||||| |||| |||| |||||||||| ||||| |||||    
T  20607340 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttagttaactaaaaaagaaagaaaaa 20607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 27665686 - 27665601
Alignment:
Q  118 tatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 203  Q
    ||||||| |||  ||||||||||||||||||||||||||| |  ||| |  |||||||| ||||||||||| | || |||||||||    
T  27665686 tatgtgaaaataacttatttaactaaaagagaaataaaaacaagtcgaattggtgattttaggtcaaaatttatcctaaatcaccc 27665601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 27095798 - 27095680
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttc-aggtcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||||||  |||||||||||||    
T  27095798 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttaggtcaaaattga 27095700  T
Q  191 cccaaaatcacccgtctgac 210  Q
    ||| ||||||||| ||||||    
T  27095699 ccctaaatcacccatctgac 27095680  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 33012170 - 33012053
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | ||| |||||| ||||||||||| |||| |||||| || || || ||||  ||||| | |||||| | |||||||  || ||||||||||    
T  33012170 aaaaacaaacgaaacaaaactgaaaatatgtga-aatcacttattcaattagaatagaaggaaaaacaattcggatgagtgatttttgggtcaaaattga 33012072  T
Q  191 cccaaaatcacccgtctga 209  Q
    ||| |||||||||||||||    
T  33012071 ccctaaatcacccgtctga 33012053  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 40039360 - 40039398
Alignment:
Q  164 ggaggggtgatttcaggtcaaaattgacccaaaatcacc 202  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  40039360 ggaggggtgatttcaggtcaaaattgaccctacatcacc 40039398  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 44942378 - 44942261
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 190  Q
    |||||||| ||||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||| |||  ||||||||||||    
T  44942378 aaaaacaaacaaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaagaaaaaacaactcggaggggtgatttttgggtcaaaattga 44942280  T
Q  191 cccaaaatcacccgtctga 209  Q
    ||  ||||||||| |||||    
T  44942279 ccataaatcacccatctga 44942261  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 25067934 - 25067835
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattgacccaaaatcac 201  Q
    |||||||||  ||||||||||| |||| |||||| || ||||| ||||  ||||| |  |||||||||||||||  || ||||||||||||| |||||||    
T  25067934 aaagaaaacagaaaatatgtga-aatcacttattcaattaaaatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcac 25067836  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 31609823 - 31609735
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 192  Q
    |||||||||| |||| |||||| |||| || ||| |||||||||||||||||||| | || |||||||||||| ||||||||||||||||    
T  31609823 aaagaaaactaaaaaaatgtga-aatcactcattaaactaaaagagaaataaaaacaatttggaggggtgattgcaggtcaaaattgacc 31609735  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 18889158 - 18889058
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcacc 202  Q
    |||||||| | ||| ||||||| ||||  ||||||  |||||||||||||||||| | ||| ||||||||||||  || |||||||||| | ||||||||    
T  18889158 aaagaaaattgaaagtatgtgaaaatcatttattttgctaaaagagaaataaaaacaattcagaggggtgattttcggccaaaattgactctaaatcacc 18889059  T
Q  203 c 203  Q
    |    
T  18889058 c 18889058  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 31427182 - 31427237
Alignment:
Q  102 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 157  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||||||||| ||||    
T  31427182 aaaagaaaacttaaaatatgtgaaaataacttattttactaaaagagaaattaaaa 31427237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 38783147 - 38783050
Alignment:
Q  106 gaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 203  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||| ||||| | |||  | |  ||||||||| |||||||| |||  |||||||||    
T  38783147 gaaaactgaaaatatgttaaaatcacttatttaactaaaagagaaagaaaaacaattcaaatgaatgatttcagatcaaaattaaccttaaatcaccc 38783050  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 42490986 - 42490876
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 190  Q
    |||||||| | |||||||||| || |||||||| |||| |||||| || ||| | ||||  ||||| | ||||||||||||| ||| |||||||| ||||    
T  42490986 aaaaacaaacgaaagaaaactgaagatatgtga-aatcacttattcaattaagatagaacgaaaaacaattcggaggggtgatttttaggtcaaacttga 42490888  T
Q  191 cccaaaatcacc 202  Q
    ||| ||||||||    
T  42490887 ccctaaatcacc 42490876  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 39990203 - 39990309
Alignment:
Q  93 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 192  Q
    ||||||| | |||||||||| ||||||||||| |||| | ||||||||| |||||||||   ||| | ||||||| |||||||||| |||||||||||||    
T  39990203 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacctatttaact-aaagagaaagttaaacaattcggagaggtgatttcatgtcaaaattgacc 39990301  T
Q  193 caaaatca 200  Q
    | ||||||    
T  39990302 ctaaatca 39990309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 4028264 - 4028168
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 201  Q
    |||||||||||||||||| ||| || || ||||||||||||||||||||| |||||||  ||   ||||||||||  |||||||||| |||| |||||||    
T  4028264 aaagaaaacttaaaatatatgaaaaatcacttatttaactaaaagagaaagaaaaataagtc---ggggtgattttgggtcaaaattaaccctaaatcac 4028168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 36579340 - 36579448
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 190  Q
    |||||||| |||||||||||  |||||||||| ||||| |||||| |||||  | ||||  ||||| | ||||||||||||| |||| ||||||||||||    
T  36579340 aaaaacaaacaaaagaaaacaaaaaatatgtg-gaatcacttattcaactaggatagaaggaaaaacaattcggaggggtgattttcgggtcaaaattga 36579438  T
Q  191 cccaaaatca 200  Q
    ||| ||||||    
T  36579439 ccctaaatca 36579448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 43256599 - 43256663
Alignment:
Q  114 aaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttca 178  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| | |||  || ||||||||||    
T  43256599 aaaatatgtgataatcacttatttaactaaaagagaaataaaaacaattcaaagtggtgatttca 43256663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 5238050 - 5237936
Alignment:
Q  90 caaaaaacaagcaaaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaatt 188  Q
    |||||||| | |||||||||| | ||||||||||| || || |||||||||||||||||||||  |||| | ||  || |||||||||   |||||| ||    
T  5238050 caaaaaaccaacaaaagaaaattgaaaatatgtgaaaaatctcttatttaactaaaagagaaagcaaaacaatttagaagggtgattttgagtcaaattt 5237951  T
Q  189 gacccaaaatcaccc 203  Q
    ||||| |||||||||    
T  5237950 gaccctaaatcaccc 5237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 28664940 - 28665058
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  ||||||||||||||| ||| ||||||||||    
T  28664940 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgattttagggtcaaaattga 28665038  T
Q  191 cccaaaatcacccgtctgac 210  Q
    ||| ||||||||| ||||||    
T  28665039 ccctaaatcacccatctgac 28665058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 45457585 - 45457695
Alignment:
Q  93 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcag-gtcaaaattgac 191  Q
    ||||||| | ||||||||| |||||||||||| |||| |||||| || ||| | ||||  ||||| | |||||||| |||||||  | ||||||||||||    
T  45457585 aaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaattcggaggagtgatttttgcgtcaaaattgac 45457683  T
Q  192 ccaaaatcaccc 203  Q
    || |||||||||    
T  45457684 cctaaatcaccc 45457695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 9785410 - 9785299
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    ||||| || |||||||||||  ||||||||||| |||| |||||| || ||| | ||||  ||||| | |||| |||||||||||  || ||||||||||    
T  9785410 aaaaataaacaaaagaaaacaaaaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattga 9785312  T
Q  191 cccaaaatcaccc 203  Q
    ||| |||||||||    
T  9785311 ccctaaatcaccc 9785299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 23303563 - 23303503
Alignment:
Q  132 ttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 192  Q
    |||||||||| ||||||||| ||||| | || | |||| ||||||||| ||||||||||||    
T  23303563 ttatttaactgaaagagaaagaaaaacaatttgaagggctgatttcagatcaaaattgacc 23303503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 24988452 - 24988500
Alignment:
Q  162 tcggaggggtgatttcaggtcaaaattgacccaaaatcacccgtctgac 210  Q
    |||||||||||||||  |||||||||||||||  |||||||| ||||||    
T  24988452 tcggaggggtgattttgggtcaaaattgaccctgaatcacccctctgac 24988500  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 5327512 - 5327613
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 191  Q
    |||||||| | |||||||||| ||||| ||||| |||| ||||||||||| ||||||||| ||||| | || | ||||||||||| | ||||||||| ||    
T  5327512 aaaaacaaacgaaagaaaactgaaaatttgtgataatcacttatttaactgaaagagaaagaaaaacaatttgcaggggtgattttaagtcaaaattaac 5327611  T
Q  192 cc 193  Q
    ||    
T  5327612 cc 5327613  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 4219273 - 4219175
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaaga--gaaataaaaatacttcggaggggtgatttcaggtcaaaattg 189  Q
    |||||||| | |||||||||| ||||||||||| |||| |||||||||||||| ||  |||||| ||    |||||| | ||||||||||||||||||||    
T  4219273 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaactaaaggaaggaaatacaa----ttcggatgagtgatttcaggtcaaaattg 4219178  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 31270419 - 31270308
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | ||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||||| |||| |||||||||||  || ||||||||||    
T  31270419 aaaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaaggaaaaataattcgaaggggtgatttttgggtcaaaattga 31270321  T
Q  191 cccaaaatcaccc 203  Q
    ||| |||||||||    
T  31270320 ccctaaatcaccc 31270308  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 13702019 - 13702125
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattgacccaaaatcac 201  Q
    |||||||||  ||||||||||| |||| |||||| || ||  | ||||| ||||||| |||| |||||||| |||  ||||||||||||||| |||||||    
T  13702019 aaagaaaacagaaaatatgtga-aatcacttattcaattatgatagaaagaaaaataattcgaaggggtgacttttgggtcaaaattgaccctaaatcac 13702117  T
Q  202 ccgtctga 209  Q
    || |||||    
T  13702118 ccctctga 13702125  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 34960894 - 34961011
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 190  Q
    |||||||| | ||||||||| |||||||||||| |||| |||||| || || || ||||  ||||| | ||| ||||||||| |||  ||||||||||||    
T  34960894 aaaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattagaatagaagaaaaaacaattctgaggggtgatttttgggtcaaaattga 34960992  T
Q  191 cccaaaatcacccgtctga 209  Q
    ||| || |||||| |||||    
T  34960993 ccctaagtcacccctctga 34961011  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 49628123 - 49628228
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttc-aggtcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| |||||  | ||||  ||||| | ||| ||||||||||||  |||||||||||||    
T  49628123 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaacaattcagaggggtgatttttaggtcaaaattga 49628221  T
Q  191 cccaaaa 197  Q
    |||||||    
T  49628222 cccaaaa 49628228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 11819165 - 11819058
Alignment:
Q  103 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattgacccaaaatcac 201  Q
    ||||||||| |||||||||||| |||| |||||| || |||   ||||  ||||| |  |||||||||||||||  || ||||||||||||| |||||||    
T  11819165 aaagaaaacataaaatatgtga-aatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcac 11819067  T
Q  202 ccgtctgac 210  Q
    || ||||||    
T  11819066 ccctctgac 11819058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 29503368 - 29503332
Alignment:
Q  168 gggtgatttcaggtcaa-aattgacccaaaatcaccc 203  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29503368 gggtgatttcaggtcaagaattgacccaaaatcaccc 29503332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 51202418 - 51202454
Alignment:
Q  168 gggtgatttcaggtcaa-aattgacccaaaatcaccc 203  Q
    ||||||||||||||||| |||||||||||||||||||    
T  51202418 gggtgatttcaggtcaagaattgacccaaaatcaccc 51202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 15175872 - 15175797
Alignment:
Q  126 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 201  Q
    |||| ||||||||| ||||| ||||| ||||| | ||||||||||||||||  |||||||||||||| ||||||||    
T  15175872 aatcacttatttaagtaaaatagaaagaaaaacatttcggaggggtgattttgggtcaaaattgaccgaaaatcac 15175797  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 15470296 - 15470371
Alignment:
Q  126 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 201  Q
    |||| ||||||||| ||||| ||||| ||||| | ||| ||||||||||||  |||||||||||||| ||||||||    
T  15470296 aatcacttatttaagtaaaatagaaagaaaaacatttcagaggggtgattttgggtcaaaattgaccaaaaatcac 15470371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 7870221 - 7870151
Alignment:
Q  133 tatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 203  Q
    ||||||||||||||||||| || || | ||| ||  ||||||||||| | ||||||||||| |||||||||    
T  7870221 tatttaactaaaagagaaagaagaacaattccgattggtgatttcagataaaaattgaccctaaatcaccc 7870151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 21507836 - 21507947
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgat-ttcaggtcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| |||||  | ||||  ||||| | || ||||||||||| ||  ||||||||||||    
T  21507836 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaacaatttggaggggtgatgtttgggtcaaaattga 21507934  T
Q  191 cccaaaatcaccc 203  Q
    ||| |||||||||    
T  21507935 ccctaaatcaccc 21507947  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 10952323 - 10952403
Alignment:
Q  119 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatc 199  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| |||||||| |||||    
T  10952323 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10952403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 10960328 - 10960408
Alignment:
Q  119 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatc 199  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| |||||||| |||||    
T  10960328 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10960408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 19384425 - 19384338
Alignment:
Q  104 aagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 191  Q
    |||||| || ||||||||||| |||  ||| ||||||||||||||||| ||||| | |||| |||||| ||||  |||||||||||||    
T  19384425 aagaaagctgaaaatatgtgaaaattacttgtttaactaaaagagaaagaaaaacatttcgaaggggttattttgggtcaaaattgac 19384338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 17949165 - 17949126
Alignment:
Q  165 gaggggtgatttcaggtcaa-aattgacccaaaatcaccc 203  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  17949165 gaggggtgatttcaggtcaataattgacccaaaatcaccc 17949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 37612746 - 37612635
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | ||||||||   ||||||||||| |||| |||||| |||||  | ||||  ||||| | ||||||||||||||||  || ||||||||||    
T  37612746 aaaaacaaacgaaagaaaataaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaaaaattcggaggggtgatttttgggtcaaaattga 37612648  T
Q  191 cccaaaatcaccc 203  Q
    ||| |||||||||    
T  37612647 ccctaaatcaccc 37612635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 374376 - 374317
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaa 151  Q
    |||||||| ||||| |||||| |||||| |||| ||||  ||||||||||||||||||||    
T  374376 aaaaacaaacaaaataaaactgaaaatacgtgaaaatcatttatttaactaaaagagaaa 374317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 10649367 - 10649328
Alignment:
Q  165 gaggggtgatttcaggtcaa-aattgacccaaaatcaccc 203  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10649367 gaggggtgatttcaggtcaagaattgacccaaaatcaccc 10649328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 17331421 - 17331303
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||| | ||||  ||||| |  |||||||||||||||  || ||||||||||    
T  17331421 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattga 17331323  T
Q  191 cccaaaatcacccgtctgac 210  Q
    ||| ||||||||| ||||||    
T  17331322 ccctaaatcacccctctgac 17331303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 26612097 - 26612049
Alignment:
Q  102 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaa 150  Q
    ||||||||||| ||| ||||||| |||| | ||||||||||||||||||    
T  26612097 aaaagaaaactaaaagtatgtgaaaatcacgtatttaactaaaagagaa 26612049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 39179856 - 39179939
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgattt 176  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || || || ||||  ||||||| ||||||||||||||||    
T  39179856 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattagaatagaaggaaaaataattcggaggggtgattt 39179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 43493965 - 43493854
Alignment:
Q  92 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 190  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || || || ||||  ||||| | ||||||| ||||||||  || ||||||||||    
T  43493965 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaattagaatagaaggaaaaacaattcggagaggtgatttttggatcaaaattga 43493867  T
Q  191 cccaaaatcaccc 203  Q
    ||| |||||||||    
T  43493866 ccctaaatcaccc 43493854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 15739 - 15813
Alignment:
Q  126 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatca 200  Q
    |||| ||||||||| ||||||||||| ||||| | ||  ||  |||||||||| ||||||||||||| |||||||    
T  15739 aatcacttatttaattaaaagagaaagaaaaacaatttagattggtgatttcaagtcaaaattgaccaaaaatca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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