View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0825_low_31 (Length: 278)

Name: NF0825_low_31
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0825_low_31
NF0825_low_31
[»] chr4 (4 HSPs)
chr4 (39-208)||(40910987-40911158)
chr4 (46-208)||(42346052-42346216)
chr4 (46-115)||(29362806-29362875)
chr4 (46-115)||(53286580-53286649)
[»] chr3 (7 HSPs)
chr3 (39-208)||(18204800-18204971)
chr3 (46-208)||(11824769-11824933)
chr3 (46-115)||(31484426-31484495)
chr3 (46-115)||(33005259-33005328)
chr3 (49-115)||(49565194-49565260)
chr3 (46-115)||(35713955-35714024)
chr3 (46-115)||(36090210-36090279)
[»] scaffold0521 (1 HSPs)
scaffold0521 (39-208)||(2321-2492)
[»] chr1 (6 HSPs)
chr1 (39-208)||(37904003-37904174)
chr1 (46-208)||(45506183-45506347)
chr1 (46-115)||(2051042-2051111)
chr1 (46-115)||(36870301-36870370)
chr1 (46-115)||(48959381-48959450)
chr1 (88-208)||(23694971-23695093)
[»] chr7 (5 HSPs)
chr7 (48-205)||(35102631-35102790)
chr7 (46-208)||(3066349-3066513)
chr7 (46-208)||(5091848-5092012)
chr7 (46-208)||(29955382-29955546)
chr7 (46-208)||(32657603-32657766)
[»] chr2 (3 HSPs)
chr2 (46-208)||(205122-205286)
chr2 (46-208)||(21590293-21590457)
chr2 (46-195)||(5000494-5000645)
[»] scaffold0374 (1 HSPs)
scaffold0374 (45-115)||(975-1045)
[»] scaffold0160 (1 HSPs)
scaffold0160 (46-115)||(37246-37315)
[»] chr6 (3 HSPs)
chr6 (46-107)||(24457316-24457377)
chr6 (46-115)||(29370886-29370955)
chr6 (46-115)||(29373441-29373510)
[»] chr5 (1 HSPs)
chr5 (46-115)||(10039020-10039089)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 40910987 - 40911158
Alignment:
Q  39 atgaagctgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttca 138  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  40910987 atgaagctgactgataggtttcacaagactatcaactatcccgtttttgatccacccatgcatttccttattaacagaactaatgtgcagacaactttca 40911086  T
Q  139 accagaatctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||| |||||| |||| |||| |||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  40911087 accacaatctctagccgaaaagatctcttctctcttatcgtcacaatatcaatgacatgattatagatttcg 40911158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 42346052 - 42346216
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| |  |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  42346052 tgactgataggtttcacaagagtatcccctacccggtttttgatccccttatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgaata 42346151  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  42346152 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 42346216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 29362875 - 29362806
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || |||||| |||| || |||||||||||| |||||||    
T  29362875 tgactgataggtttcacaagagtatcccctacccggttttttatccccctatgcatttccttcttgacaa 29362806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 53286580 - 53286649
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    |||||||||| |||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  53286580 tgactgatagctttcacaagagtatcccctacccagtttttgatccccctatgcatttccttcttgacaa 53286649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 18204800 - 18204971
Alignment:
Q  39 atgaagctgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttca 138  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||    
T  18204800 atgaagctgactgataggtttcacaagattattaactatcccgtttttgatccacccatgcatttccttattgacagaactaacgtgcacacaactttca 18204899  T
Q  139 accagaatctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    || |  |||||||||| ||||||||||  |||||||||||||| | ||||| | ||||||||||||||||||    
T  18204900 acaaacatctccagcccaaaacatctcttctctcttatcgtcatagtatcaattacatgattatagatttcg 18204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 11824769 - 11824933
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  11824769 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 11824868  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  11824869 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 11824933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 31484426 - 31484495
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  31484426 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaa 31484495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 33005328 - 33005259
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  33005328 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaa 33005259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 49565260 - 49565194
Alignment:
Q  49 ctgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    |||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  49565260 ctgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaa 49565194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 35713955 - 35714024
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  | | || ||||||||||| || |||||||||||| |||||||    
T  35713955 tgactgataggtttcacaagagtatccccaacccggtttttgatccccctatgcatttccttcttgacaa 35714024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 36090279 - 36090210
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||| ||||| |||||||    
T  36090279 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatctccttcttgacaa 36090210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 2492 - 2321
Alignment:
Q  39 atgaagctgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttca 138  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  2492 atgaagctgactgataggtttcacaagattattaactatcccgtttttgatccacccatgcatttccttattgacagaactaatgtgcacacaactttca 2393  T
Q  139 accagaatctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    || |  ||||||| || ||||| ||||  |||||||||||||| | ||||| | ||||||||||||||||||    
T  2392 acaaacatctccatcccaaaacttctcttctctcttatcgtcatagtatcaattacatgattatagatttcg 2321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 37904174 - 37904003
Alignment:
Q  39 atgaagctgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttca 138  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  37904174 atgaagctgactgataggtttcacaagattattaactatcccgtttttgatccacccatgcatttccttattgacagaactaatgtgcacacaactttca 37904075  T
Q  139 accagaatctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    || |  ||||||| || ||||| ||||  |||||||||||||| | ||||| | ||||||||||||||||||    
T  37904074 acaaacatctccaacccaaaacttctcttctctcttatcgtcatagtatcaattacatgattatagatttcg 37904003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 45506347 - 45506183
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| ||||||| |  | | |||| ||||||||| |  |  |    
T  45506347 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaagatgaatttgcaaacaactttcgatgacta 45506248  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||   || |||||||||||||||||| ||||||| || | |||||||    
T  45506247 tctccccccaataacatctcttatcgcttatcgtcacaatatcactgacatggttcttgatttcg 45506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 2051111 - 2051042
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  2051111 tgactgataggtttcacaagaatatcccctacccggtttttgatccccctatgcatttccttcttgacaa 2051042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 36870370 - 36870301
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  36870370 tgactgataggtttcacaagaatatcccctacccggtttttgatccccctatgcatttccttcttgacaa 36870301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 48959381 - 48959450
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  48959381 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaa 48959450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 23695093 - 23694971
Alignment:
Q  88 atccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaatctccagccaaaaacatctcctctc--ttatcgtcacaatat 185  Q
    |||| ||||||||||||||| ||||||| |  | | ||||  ||||||||||  |  ||||||  |||| |||||||| ||||  |||||||||||||||    
T  23695093 atccccccatgcatttccttcttgacaagatgaatttgcaagcaactttcaatgactatctccccccaataacatctcttctcgcttatcgtcacaatat 23694994  T
Q  186 cagtgacatgattatagatttcg 208  Q
    |||||||||| || | |||||||    
T  23694993 cagtgacatggttcttgatttcg 23694971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 35102631 - 35102790
Alignment:
Q  48 actgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaatc 147  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||| | |||||| |||||||||| || |||    
T  35102631 actgataggtttcacaagactattaactatctcgtttttgatccacccgtgcatttccttattgacagaactaatatgcagaaaactttcaactagcatc 35102730  T
Q  148 tccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatt 205  Q
    ||| ||| | ||||||||  ||||||||||||| |||||| ||||||||| |||||||||    
T  35102731 tcccgccgataacatctcttctctcttatcgtcgcaatataagtgacatgtttatagatt 35102790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 3066513 - 3066349
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  3066513 tgactgataggtttcacaagagtatcccctacccggtttttgatcctcctatgcatttccttcttgacaagatgagtttgcaagcaactttcgatgacta 3066414  T
Q  146 tctccagccaaaaaca--tctcctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||  ||| ||| |||||||||||||||||||||||||| || | |||||||    
T  3066413 tctccccccaataacatttcttctcacttatcgtcacaatatcagtgacatggttcttgatttcg 3066349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 5091848 - 5092012
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  5091848 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 5091947  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  5091948 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 5092012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 29955382 - 29955546
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| ||   ||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  29955382 tgactgataggtttcacaagaatatcccctacccgacttttgatccccctatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 29955481  T
Q  146 tctccagccaaaaacatctcctct--cttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| |||||||| |||  ||||||||||||||||||||||||||||| | |||||||    
T  29955482 tctccccccaataacatctcttcttgcttatcgtcacaatatcagtgacatgattcttgatttcg 29955546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 32657603 - 32657766
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| |||||||||||||| || |||||||| ||| ||||||| |  | | ||||  |||||||| |  |  |    
T  32657603 tgactgataggtttcacaagagtatccccta-cccgtttttgatccccctatgcattttcttcttgacaagatgaatttgcaagcaactttcgatgacta 32657701  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  32657702 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 32657766  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 205122 - 205286
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  205122 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 205221  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  205222 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 205286  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 21590457 - 21590293
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| |  |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  21590457 tgactgataggtttcacaagagtatcccctacccggtttttgatccccttatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 21590358  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatgattatagatttcg 208  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| ||||||| || | |||||||    
T  21590357 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatggttcttgatttcg 21590293  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 5000645 - 5000494
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaaaactattgtgcagacaactttcaaccagaa 145  Q
    ||||||||||||||||||| | ||||  ||| |  ||||||||||| || |||||||||||| ||||||| |  | | ||||  |||||||| |  |  |    
T  5000645 tgactgataggtttcacaagagtatcccctacctggtttttgatccccctatgcatttccttcttgacaagatgaatttgcaagcaactttcgatgacta 5000546  T
Q  146 tctccagccaaaaacatctc--ctctcttatcgtcacaatatcagtgacatg 195  Q
    |||||  |||| ||||||||  ||| |||||||||||||||||| |||||||    
T  5000545 tctccccccaataacatctcttctcgcttatcgtcacaatatcactgacatg 5000494  T

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Target: scaffold0374 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 975 - 1045
Alignment:
Q  45 ctgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||| || | ||||  ||| || ||||||||||| || |||||||||||| |||||||    
T  975 ctgactgataggtttcataagagtatcccctacccagtttttgatccccctatgcatttccttcttgacaa 1045  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 37246 - 37315
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| ||  ||||||||||| |||||||    
T  37246 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctttgcatttccttcttgacaa 37315  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 24457316 - 24457377
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttcctt 107  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || ||||||||||||    
T  24457316 tgactgataggtttcacaagagtatcccctacccggtttttgatcctcctatgcatttcctt 24457377  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 29370955 - 29370886
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || ||||||||||| || |||||||| ||| |||||||    
T  29370955 tgactgataggtttcacaagagtatcccctacccggtttttgatccccctatgcattttcttcttgacaa 29370886  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 29373510 - 29373441
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||   || || ||||||||||| || |||||||||||| |||||||    
T  29373510 tgactgataggtttcacaagagtatcccatacccagtttttgatccccctatgcatttccttcttgacaa 29373441  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 10039020 - 10039089
Alignment:
Q  46 tgactgataggtttcacaacactatcaactatcccgtttttgatccacccatgcatttccttattgacaa 115  Q
    ||||||||||||||||||| | ||||  ||| || |||||||| || || |||||||||||| |||||||    
T  10039020 tgactgataggtttcacaagagtatcccctacccggtttttgacccccctatgcatttccttcttgacaa 10039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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