View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_33 (Length: 265)
Name: NF0825_low_33
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_33 |
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| [»] scaffold0180 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19736952 - 19737149
Alignment:
| Q |
1 |
taggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttcttcggctattctct |
100 |
Q |
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| T |
19736952 |
taggaaagtttatttccaccattggatgaaatgaaaaacacactcttatcatacactctcaccactaaattttttacactatcttcttcggccattcctt |
19737051 |
T |
|
| Q |
101 |
ctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaattttcagattgaaacatctgcattattcattgtctgatct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19737052 |
ctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaattttcagattgaaacatctgcagtattcattgtctgatct |
19737149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 23684398 - 23684201
Alignment:
| Q |
1 |
taggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttcttcggctattctct |
100 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
23684398 |
taggaaagtttatttccaccattggatgagatgagaaacacactcttatcatacactctcgacattagattttttacactatcttcttcggccattctct |
23684299 |
T |
|
| Q |
101 |
ctcacccaccatcaacaacacccagcccttttccacactcttccataaatcatccgaattttcagattgaaacatctgcattattcattgtctgatct |
198 |
Q |
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| T |
23684298 |
ctcacccaccatcaacaacacctagcccttttccacactcttccataaatcatccgaattttcagattgaaacatcctcattattcattgtctgatct |
23684201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 14946759 - 14946894
Alignment:
| Q |
9 |
tttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccactagat---tttttacactatcttcttcggctattctctctcac |
105 |
Q |
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|||||||| ||||||||||||||| | ||||||||| |||||| |||||||||||||||||| ||||||||||||||||| | | |||||||||||| |
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| T |
14946759 |
tttatttctaccattggatgaaataaaaaacacactattatcacacactctcaccactagatctttttttacactatcttctccaaccattctctctcac |
14946858 |
T |
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| Q |
106 |
ccaccatcaacaacacccagcccttttccacactct |
141 |
Q |
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| T |
14946859 |
ccaccatcaacaacaccatgcccttttccacactct |
14946894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 31807947 - 31807806
Alignment:
| Q |
3 |
ggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccactaga---ttttttacactatcttcttcggctattctc |
99 |
Q |
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||||| |||||||| |||||||||||| || | ||||||||| |||||||||||||||||||||||| |||||| ||||||||||| | | |||||| |
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| T |
31807947 |
ggaaaatttatttctaccattggatgagataaaaaacacactattatcatacactctcaccactagatctttttttccactatcttctccaaccattctc |
31807848 |
T |
|
| Q |
100 |
tctcacccaccatcaacaacacccagcccttttccacactct |
141 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
31807847 |
tctcacccaccatcaacaacaccaagccattttccacactct |
31807806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 5825391 - 5825460
Alignment:
| Q |
18 |
accattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttct |
87 |
Q |
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|||||| ||| ||||||| |||||| | ||||| ||| |||||| ||||||||||||||||||||||||| |
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| T |
5825391 |
accattagatcaaatgaggaacacattattatcctactctctcaacactagattttttacactatcttct |
5825460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 49086188 - 49086080
Alignment:
| Q |
3 |
ggaaattttatttccaccattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttcttcggctattctctct |
102 |
Q |
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||||| |||||||| |||||||||| ||| || ||||||||| ||||||| |||| ||||||||| |||||||||||||||||| | | ||||||||| |
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| T |
49086188 |
ggaaagtttatttctaccattggattaaaagaaaaacacactattatcatgcactttcaccactatattttttacactatcttccccaaccattctctct |
49086089 |
T |
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| Q |
103 |
cacccacca |
111 |
Q |
| |
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||||||||| |
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| T |
49086088 |
cacccacca |
49086080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 46740554 - 46740500
Alignment:
| Q |
20 |
cattggatgaaatgagaaacacactcttatcatacactctcaccactagattttt |
74 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | |||| || ||||||||| |
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| T |
46740554 |
cattggattaaatgaaaaacacactcttatcatactccctcaacattagattttt |
46740500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8653711 - 8653640
Alignment:
| Q |
18 |
accattggatgaaatgagaaacacactcttatcatacactctcaccactag---attttttacactatcttc |
86 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||| | |||| |||||| ||||| |||||||||||| |
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| T |
8653711 |
accatttgatcaaatgagaaacacactcttatcatattccctcaacactagatcattttctacactatcttc |
8653640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 788083 - 788152
Alignment:
| Q |
18 |
accattggatgaaatgagaaacacactcttatcatacactctcaccactagattttttacactatcttct |
87 |
Q |
| |
|
|||||| ||| ||||||| |||||| | ||||| ||| |||||| ||||| ||||||||||||||||||| |
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| T |
788083 |
accattagatcaaatgaggaacacattattatcctaccctctcaacactaaattttttacactatcttct |
788152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 22201 - 22255
Alignment:
| Q |
20 |
cattggatgaaatgagaaacacactcttatcatacactctcaccactagattttt |
74 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | |||| || ||||||||| |
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|
| T |
22201 |
cattggattaaatgaaaaacacactcttatcatactccctcaacattagattttt |
22255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27279 - 27349
Alignment:
| Q |
19 |
ccattggatgaaatgagaaacacactcttatcatacactctcaccacta---gattttttacactatcttc |
86 |
Q |
| |
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||||| ||| ||||||| |||||| ||||||||||| |||||| ||||| |||||||||||||||||| |
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|
| T |
27279 |
ccattagattaaatgaggaacacattcttatcatactctctcaacactaaattattttttacactatcttc |
27349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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