View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_37 (Length: 252)
Name: NF0825_low_37
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 47429714 - 47429836
Alignment:
| Q |
1 |
ttgaagattccaagcatcatccactttcacatcaactaatgggtttgatagctcaactagcttgagtaaaagattaaaagaattgaagagttaaatgttc |
100 |
Q |
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| T |
47429714 |
ttgaagattccaagcatcatccactttcacatcaactaatgggtttaatagctcaactagcttgagtaaaagattaaaagagttgaagagttaaatgttc |
47429813 |
T |
|
| Q |
101 |
atgattcaagtcatcgcaatgag |
123 |
Q |
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||||||||||||||||||||||| |
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| T |
47429814 |
atgattcaagtcatcgcaatgag |
47429836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 47429901 - 47429951
Alignment:
| Q |
188 |
tagtgttaattgtttagtccaatagcttttgattctttgtatagtccctgt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47429901 |
tagtgttaattgtttagtccaatagcttttgattctttgtatagtccctgt |
47429951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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