View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_4 (Length: 512)
Name: NF0825_low_4
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 25431024 - 25431437
Alignment:
| Q |
14 |
agagtagttggttctttataatgtaagtgtatcccttatgctatnnnnnnnngctagaagacagcagcgagcctatgatcattgtaggttatcacaaaac |
113 |
Q |
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| T |
25431024 |
agagtagttggttctttataatgtaagtgtatcccttatgctataaaaaaaaattagaagacaacagcgagcctataatcattgtaggttatcacaaaac |
25431123 |
T |
|
| Q |
114 |
ttggagcatacagactactcaacctgttaacaatgaacactgggactgaaaaacaaatgaatacaatgtctctactaagaacattgtaattgaagaaagc |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25431124 |
ttggagcatacagactactcaacccgttaacaatgaacactgggactggaaaaaaaatgaatacaatgtctctactaagaacattgtaattgaagaaagc |
25431223 |
T |
|
| Q |
214 |
cacacaaataaggagctcacaatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacaataatgtaaggtcacacagaaacaaactg |
313 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25431224 |
cacacaaataaggagctcactatcactaaaagtagtgaatgaagaagtgaactcagatgaaggtcaaaacatcaatgtaaggtcacacagaaacaaactg |
25431323 |
T |
|
| Q |
314 |
attcc--taagactagtagattgacaacttacttctgatgatgagataggtagtgctggtgaactaatgaattttgcaatgctagtagatgtagaaccaa |
411 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25431324 |
attcctataagactagtagattgacaacttatttctgatgatgagataggtagtgatggtgaactaatgaattttgcaatgctagcagatgtagaaccaa |
25431423 |
T |
|
| Q |
412 |
tttattacataata |
425 |
Q |
| |
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|||||||||||||| |
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| T |
25431424 |
tttattacataata |
25431437 |
T |
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