View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825_low_42 (Length: 251)
Name: NF0825_low_42
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 49182786 - 49183005
Alignment:
| Q |
24 |
tcatcaattattatatagtgccaatgtactttgctcagctttggtctatcatgcttgttcatcagatattcatacgttgtcaaaagaacattgaacttgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49182786 |
tcatcaattattatatagtgccaatgtactttgctcagctttggtctatcatgcttgttcatcagatattcatacgttgtcaaaagaacattgaatttgt |
49182885 |
T |
|
| Q |
124 |
ggtgaacaatcctttccctagaatatgaaagaatcaataaggaacatacacaagacaaagtatcaaacaga-----ggggtcaatatcttaaagtccaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49182886 |
ggtgaacaatcctttccctagaatatgaaagaatcaataaggaacatacacaagacaaagtatcaaacagatgaagggggtcaatatcttaaagtccaat |
49182985 |
T |
|
| Q |
219 |
tacttgaataaccggcgtct |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49182986 |
tacttgaataaccggcgtct |
49183005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6146 times since January 2019
Visitors: 5762