View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_43 (Length: 250)
Name: NF0825_low_43
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_43 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 27629321 - 27629497
Alignment:
| Q |
74 |
aaggttaggttcagaggctttagtgatatgccccattaatttggagggggcaggcttgtagtatacatacacttatggccatcataattgggaagtctct |
173 |
Q |
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| T |
27629321 |
aaggttaggttcagaggctttagtgatatgccccattaatttggagggggcaggcttgtagtatacatacacttatggccatcataattggaaagtctct |
27629420 |
T |
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| Q |
174 |
ttcccaagcatgaatcatgatacagcctcacaagctgctccataacagcacagatcacacctctataagtcacttct |
250 |
Q |
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| T |
27629421 |
ttcccaagtatgaatcatgatacagcctcacaagctgctccataatagcacagatcacacctctataagtcacttct |
27629497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 34521950 - 34522112
Alignment:
| Q |
76 |
ggttaggttcagaggctttagtgatatgccccattaatttggagggggcaggcttgtagtatacatacacttatggccatcataattgggaagtctcttt |
175 |
Q |
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| T |
34521950 |
ggttaggtttagaggcttcagtgatttgccccatcaatttggaggggacgggcatgtagtatacagacacttatggccatcataatagggaagtctcttt |
34522049 |
T |
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| Q |
176 |
cccaagcatgaatcatgatacagcctcacaagctgctccataacagcacagatcacacctcta |
238 |
Q |
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| T |
34522050 |
cccaagtatgaatcatgatacagcctcagaagttgttccataacaacacaattcacacctcta |
34522112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 34487751 - 34487912
Alignment:
| Q |
77 |
gttaggttcagaggctttagtgatatgccccattaatttggagggggcaggcttgtagtatacatacacttatggccatcataattgggaagtctctttc |
176 |
Q |
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| T |
34487751 |
gttagctttagaagctttagtgatatgtcccatcaatttggagggggcaggtttgtagtatacagacacttatggccatcataatcgggaagtctctttc |
34487850 |
T |
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| Q |
177 |
ccaagcatgaatcatgatacagcctcacaagctgctccataacagcacagatcacacctctataagtc |
244 |
Q |
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| T |
34487851 |
ccaagtatga------atacagtctcataagctgctccataacgacacaattcacacctctagaagtc |
34487912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 34468138 - 34468208
Alignment:
| Q |
126 |
ggcttgtagtatacatacacttatggccatcataattgggaagtctctttcccaagcatgaatcatgataca |
197 |
Q |
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| T |
34468138 |
ggcttgtagtata-agccacttatagccatcataatagggaagtctctttcccaagtatgaatcatgataca |
34468208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 34521852 - 34521891
Alignment:
| Q |
35 |
tggtgctaaagcccaattccttccctttatttgtgtgaca |
74 |
Q |
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| T |
34521852 |
tggtgctaaagcccaattccttccctttatttgtgtgaca |
34521891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 27629225 - 27629263
Alignment:
| Q |
35 |
tggtgctaaagcccaattccttccctttatttgtgtgac |
73 |
Q |
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| T |
27629225 |
tggtgctaaagcccaattccttccctttatttgtgtgac |
27629263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 34487652 - 34487689
Alignment:
| Q |
35 |
tggtgctaaagcccaattccttccctttatttgtgtga |
72 |
Q |
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| T |
34487652 |
tggtcctaaagcccaattccttcccttaatttgtgtga |
34487689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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