View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0825_low_5 (Length: 479)
Name: NF0825_low_5
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_5 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 18012203 - 18012638
Alignment:
| Q |
11 |
cagagagaatcgaaagaaaccaaaatatttttacttacatttgataaagttgtatctggcttgaaatctactgccatactatgattatcagccccaaaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18012203 |
cagaaagaatcgaaagaaaccaaaatatttttacttacatttgataaagttgtatctggcttgaaatctactgccatactatgattatcagccccagaag |
18012302 |
T |
|
| Q |
111 |
catcagaagttcgtggaatttcatctacaatgtnnnnnnnnnnnnnnnnttgacattcaacaagtagaaatggaaagtatataatcacaccctataaagc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
18012303 |
catcagaagttcgtggaatttcatctacaatgtaaagaaaaagaaaaaattgacattcaacaagtagaaatggaaagtatata-tcacaacctataaagc |
18012401 |
T |
|
| Q |
211 |
gcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaacaacatgcgtcagacaccaaaaacactttcaatctgaagtgtc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18012402 |
gcatacatgccctaatgtcgtgttgattttggacactaacatatgtcgtacacacaacatcatgtgtcagacaccaaaaacactttcaatctgaagtgtc |
18012501 |
T |
|
| Q |
311 |
ggtactacatagatgacgaccatgatttaaaatattgttcctaatataaaatggctaaaatgaagtgataattgatttgaattaaccaaacatgcttgct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18012502 |
ggtactacatagatgacgaccatgatttaaaacattgttcctaatataaaaaggctaaaatgaagtgataattgatttgaattaaccaaaca----tgct |
18012597 |
T |
|
| Q |
411 |
tacctgcatcataactacaatgcctcctatgagtaatcctt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18012598 |
tacctgcatcataactacaatgcctcctatgagtaatcctt |
18012638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 327
Target Start/End: Complemental strand, 32851947 - 32851914
Alignment:
| Q |
294 |
tttcaatctgaagtgtcggtactacatagatgac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32851947 |
tttcaatctgaagtgtcggtactacatagatgac |
32851914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 30779 - 30736
Alignment:
| Q |
276 |
gtcagacaccaaaaacactttcaatctgaagtgtcggtactaca |
319 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
30779 |
gtcaaacaccaaacacactttcaatctgaagtgtcagtactaca |
30736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 34739047 - 34739007
Alignment:
| Q |
276 |
gtcagacaccaaaaacactttcaatctgaagtgtcggtact |
316 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
34739047 |
gtcacacaccaaacacactttcaatcagaagtgtcggtact |
34739007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4710 times since January 2019
Visitors: 5752