View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0825_low_8 (Length: 448)
Name: NF0825_low_8
Description: NF0825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0825_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Original strand, 27755943 - 27756356
Alignment:
| Q |
30 |
attccggtgaacagagatgtgtctcaatccgacgtggcggcgattctttactcttcaggcacaacggggagaagcaagggagtgatgctgactcaccaga |
129 |
Q |
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| T |
27755943 |
attccggtgaacagagatgtgtctcaatccgacgtggcggcgattctttactcttcaggcacaacggggagaagcaagggagtgatgctgactcaccaga |
27756042 |
T |
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| Q |
130 |
acttaatagctacagcggtggcgggagcggtggatcaggaccagaacggcgaggggaagaacgtgtttgtgtgttttgtgccaatgcaccacgtgatggg |
229 |
Q |
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| T |
27756043 |
acttaatagctacagcggtggcgggagcggtggatcaggaccagaacggcgaggggaagaacgtgtttgtgtgttttgtgccaatgcaccacgtgatggg |
27756142 |
T |
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| Q |
230 |
gttagtggggataacgtacacgcagctgcggagagggaacacggtggtgtcgtttggtggtagatttgatttggagaagatttttgcggcggtggagaag |
329 |
Q |
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| T |
27756143 |
gttagtggggataacgtacacgcagctgcggagagggaacacggtggtgtcgtttggtggtagatttgatttggagaagacttttgcggcggtggagaag |
27756242 |
T |
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| Q |
330 |
tttaaggcgacgcatttgtatgttgcaccgccggtcatggtggagctgatcaagcggcgtgaatttgtgagtggttacgagttgtcgtcgctgaagtatc |
429 |
Q |
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||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
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| T |
27756243 |
tttaaggtgacgcatttgtatgttgctccgccggtgatggtggagctgatcaagcggcgtgaggttgttatcggttacgagttgtcgtcgctgaagtatc |
27756342 |
T |
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| Q |
430 |
tcgtctgtgctgct |
443 |
Q |
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| T |
27756343 |
tcgtcggtggtgct |
27756356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 54 - 425
Target Start/End: Original strand, 27766639 - 27767010
Alignment:
| Q |
54 |
caatccgacgtggcggcgattctttactcttcaggcacaacggggagaagcaagggagtgatgctgactcaccagaacttaatagctacagcggtggcgg |
153 |
Q |
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|||||||||||||||| |||||| || || |||||||| ||||||| ||| |||||||||||| ||||||| | |||||| ||||| || ||| | || | |
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| T |
27766639 |
caatccgacgtggcggtgattctgtattcctcaggcaccacggggaaaagtaagggagtgatgttgactcatcggaacttcatagcgacggcgatagcag |
27766738 |
T |
|
| Q |
154 |
gagcggtggatcaggaccagaacggcgaggggaagaacgtgtttgtgtgttttgtgccaatgcaccacgtgatggggttagtggggataacgtacacgca |
253 |
Q |
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| | || ||||||||| |||||||||||||||| ||||| | ||||| ||||| ||||| || |||||||| || | || |||| |||||||| |
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| T |
27766739 |
gtgtggcggatcaggatttttacggcgaggggaagaatgtgttcctttgtttggtgccgatgcatcatgtgatgggattggcggtgatattatacacgca |
27766838 |
T |
|
| Q |
254 |
gctgcggagagggaacacggtggtgtcgtttggtggtagatttgatttggagaagatttttgcggcggtggagaagtttaaggcgacgcatttgtatgtt |
353 |
Q |
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| T |
27766839 |
gctgaggagagggaacacggtggtgtccatggcgggtagatttgatttggagaagactttggcggcggtggagaagtttagggtgacgcatttgtttgtt |
27766938 |
T |
|
| Q |
354 |
gcaccgccggtcatggtggagctgatcaagcggcgtgaatttgtgagtggttacgagttgtcgtcgctgaag |
425 |
Q |
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|| |||||||| |||||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||| |
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| T |
27766939 |
gctccgccggtgatggtggagctggtcaagcggcgtgaggttgtgagtggttatgatttgtcgtcgctgaag |
27767010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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