View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0826_high_2 (Length: 256)
Name: NF0826_high_2
Description: NF0826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0826_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 32260352 - 32260267
Alignment:
| Q |
29 |
aggttggatgattcatatgaaaagagggatgaaataagaattggacgaagcagaaaagatagaagcctcgtggatacgagtgaggg |
114 |
Q |
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| T |
32260352 |
aggttgggtgattcatatgaaaagagggatgaaataagaattggacgaagcagaaaagatagaagcctcgtggatacgagtgaggg |
32260267 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 32260230 - 32260147
Alignment:
| Q |
150 |
catatgccataaccgtttgattagatcaaaaggttgagatttaatcctctcattataaagagtcctctcatttgatatggcctc |
233 |
Q |
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| T |
32260230 |
catatgccataaccgtttgattagatctaaaggttgagatttaatcctctcattataaagagtcctctcatttgatatggcctc |
32260147 |
T |
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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 49569750 - 49569835
Alignment:
| Q |
29 |
aggttggatgattcatatgaaaagagggatgaaataagaattggacgaagcagaaaagatagaagcctcgtggatacgagtgaggg |
114 |
Q |
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| T |
49569750 |
aggttgggtgattcatatgaaaagagggatgaaataagaattggacgaagcagaaaagatagaagcatcgtggatacgagtgaggg |
49569835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 49569871 - 49569951
Alignment:
| Q |
150 |
catatgccataaccgtttgattagatcaaaaggttgagatttaatcctctcattataaagagtcctctcatttgatatggc |
230 |
Q |
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| T |
49569871 |
catatgccataaccgtttgattagatctaaaggttgagatttaatcatctcattataaagagtcctctcatttgatatggc |
49569951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 9045002 - 9045076
Alignment:
| Q |
156 |
ccataaccgtttgattagatcaaaaggttgagatttaatcctctcattataaagagtcctctcatttgatatggc |
230 |
Q |
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| T |
9045002 |
ccataactgtttgattagatctaagggttgagatttaaccctctcataataaagagtcatctcatttgatatggc |
9045076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 20104403 - 20104363
Alignment:
| Q |
193 |
atcctctcattataaagagtcctctcatttgatatggcctc |
233 |
Q |
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| T |
20104403 |
atcctctcataataaggagtcctctcatttgatatgtcctc |
20104363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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