View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0826_low_10 (Length: 257)
Name: NF0826_low_10
Description: NF0826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0826_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37332942 - 37333170
Alignment:
| Q |
1 |
taatgggaattataactggtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggta |
100 |
Q |
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| T |
37332942 |
taatgggaattataactggtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggta |
37333041 |
T |
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| Q |
101 |
tccactacactatgttgcatttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcaca |
200 |
Q |
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| T |
37333042 |
tccactacactatgttgcatttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcaca |
37333141 |
T |
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| Q |
201 |
aatagttacatcactggtgaagaggtttt |
229 |
Q |
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| T |
37333142 |
aatagttacatcactggtgaagaggtttt |
37333170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 37323735 - 37323961
Alignment:
| Q |
3 |
atgggaattataactggtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatc |
102 |
Q |
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| T |
37323735 |
atgggaatcataactggtgctggaattcaaggaatcatgattttggttggagggttctttaaattgccacatgaaattcctaagccattttggagatatc |
37323834 |
T |
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| Q |
103 |
cactacactatgttgcatttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaa |
202 |
Q |
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| T |
37323835 |
cactacactatgttgcatttcatacatatggatttgaaggattgttcaagaatgagtatgaagggttaatattttctactaaaaacggacaaggcacaaa |
37323934 |
T |
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| Q |
203 |
tagttacatcactggtgaagaggtttt |
229 |
Q |
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| T |
37323935 |
tggttacattagtggtgaagaggtttt |
37323961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19542664 - 19542436
Alignment:
| Q |
1 |
taatgggaattataactggtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggta |
100 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||| | ||||||||| ||||| | || |
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| T |
19542664 |
taatgggaatcataactggtgctggaatccaagcaatcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgata |
19542565 |
T |
|
| Q |
101 |
tccactacactatgttgcatttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcaca |
200 |
Q |
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|||| |||| |||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| || | ||||| ||||||||||| |
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| T |
19542564 |
tccattacattatgttgcttttcatacatattcctttgaaggattgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcact |
19542465 |
T |
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| Q |
201 |
aatagttacatcactggtgaagaggtttt |
229 |
Q |
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| || |||||| |||||||||||| |||| |
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| T |
19542464 |
agtaattacattactggtgaagagatttt |
19542436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 37345295 - 37345199
Alignment:
| Q |
1 |
taatgggaattataactggtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggag |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||| |||| | ||||| ||||||||||| |
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| T |
37345295 |
taatgggaattataactggtgctggaattcaaggaatcatgatgttggctggtggattctttagattgccaaatgatcttcctaatccattttggag |
37345199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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