View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0826_low_2 (Length: 537)
Name: NF0826_low_2
Description: NF0826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0826_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 99 - 522
Target Start/End: Complemental strand, 37844590 - 37844169
Alignment:
| Q |
99 |
gaagaatcataaaacttttggatagcaaatgcaacatataattagcaatatggtagactactaatagttttcttctttgatacatcaaacttatacaata |
198 |
Q |
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| T |
37844590 |
gaagaatcataaaacttttggatagcaaatgcaacatataattagcaatatggtagactac--atagttttcttctttgatacatcaaacttatacaata |
37844493 |
T |
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| Q |
199 |
tgttatagcctttgatgctaatgagacaagatagcaaagtaaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaat |
298 |
Q |
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| T |
37844492 |
tgttatagcctttgatgctaatgagacaagatagcaaagtgaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaat |
37844393 |
T |
|
| Q |
299 |
caaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaa |
398 |
Q |
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| T |
37844392 |
caaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaa |
37844293 |
T |
|
| Q |
399 |
gggctcgataggtgttgatgtctaacatcgacagaactttgatatatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatg |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844292 |
gggctcgataggtgttgatgtctaacatcgacagaacttcgatacatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatg |
37844193 |
T |
|
| Q |
499 |
tcggtattggtgcatgtatattgt |
522 |
Q |
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| T |
37844192 |
tcggtatcggtgcatgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
444 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
504 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
444 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
500 |
Q |
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|||||||||||| ||||||||| || |||||||||||||| | ||||| |||||||| |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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