View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0826_low_4 (Length: 413)
Name: NF0826_low_4
Description: NF0826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0826_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 59 - 324
Target Start/End: Complemental strand, 3520255 - 3519994
Alignment:
| Q |
59 |
aatattaatgttgcataagcttaagacaatcattcctaatgttgtatactagaaaacttcaacaaaaattgaaggatcagtaacctaaataaatacctgg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3520255 |
aatattaatgttgcataagcttaagacaatcattcctaatgttgtatactagaaaacttcaacaaaaattgaaggatcagtaacctaaata----cctgg |
3520160 |
T |
|
| Q |
159 |
taaacagttccaaagcctccccttcctatcttattgcctaaatgataattatcagttgccaagctcaattctttatcagaaaaatgcctaatattatcta |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3520159 |
taaacagttccaaagcctccccttcctatcttattgcctaaatgataattatcagttgccaagctcaattctttatcagaaaaatgcctaatattatcta |
3520060 |
T |
|
| Q |
259 |
aaggataacctgcacaacaaaagaacacactcacataaggagagaaaaggaaaatcatgtattcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3520059 |
aaggataacctgcacaacaaaagaacacactcacataaggagagaaaaggaaaatcatgtattcaa |
3519994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 35583046 - 35582943
Alignment:
| Q |
150 |
aatacctggtaaacagttccaaagcctccccttcctatcttattgcctaaatgataattatcagttgccaagctcaattctttatcagaaaaatgcctaa |
249 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||| |||| | |||||||| |||||| ||||| ||||| ||||| |||||||||||| ||| |
|
|
| T |
35583046 |
aatacctggtaaacagtgccaaaacctccccgtcctatctttttgcttggatgataatcatcagtggccaacctcaagtctttttcagaaaaatgcataa |
35582947 |
T |
|
| Q |
250 |
tatt |
253 |
Q |
| |
|
|||| |
|
|
| T |
35582946 |
tatt |
35582943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4949 times since January 2019
Visitors: 5753