View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0826_low_9 (Length: 275)
Name: NF0826_low_9
Description: NF0826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0826_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 16694454 - 16694647
Alignment:
| Q |
38 |
agagaaagagtcagtgcactggcttggaacggtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacaca |
137 |
Q |
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| T |
16694454 |
agagaaagagtcagtgcactggcttggaacggtcatactctgacaacaggaggaatggatggtaaaatagtaaacaatgacgttagagcgagatcacaca |
16694553 |
T |
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| Q |
138 |
tcgttgaaaccctcaagggacacgaaagaggggtttgtgagctcaaatggtcaccctctggacaacaattggcaagtggtggaaatgatgatgt |
231 |
Q |
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| T |
16694554 |
tcgttgaaaccctcaagggacacgatagaggggtttgtgggctcaaatggtcaccctctggacaacaattggcaagtggtggaaatgatgatgt |
16694647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 17668690 - 17668883
Alignment:
| Q |
38 |
agagaaagagtcagtgcactggcttggaacggtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacaca |
137 |
Q |
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| T |
17668690 |
agagaaagagtcagtgcactggcttggaacggtcatactctgacaacaggaggaatggatggtaaaatagtaaacaatgacgttagagcgagatcacaca |
17668789 |
T |
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| Q |
138 |
tcgttgaaaccctcaagggacacgaaagaggggtttgtgagctcaaatggtcaccctctggacaacaattggcaagtggtggaaatgatgatgt |
231 |
Q |
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| T |
17668790 |
tcgttgaaaccctcaagggacacgatagaggggtttgtgggctcaaatggtcaccctctggacaacaattggcaagtggtggaaatgatgatgt |
17668883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 43526933 - 43526759
Alignment:
| Q |
57 |
tggcttggaacggtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacacatcgttgaaaccctcaaggg |
156 |
Q |
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| T |
43526933 |
tggcttggaacaaccatattctgacaacaggaggaatggatggtaaagttgtaaacaatgatgttagagtgagatctcacatcgttgaaacatacatggg |
43526834 |
T |
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| Q |
157 |
acacgaaagagg-ggtttgtgagctcaaatggtcaccctctggacaacaattggcaagtggtggaaatgatgatgt |
231 |
Q |
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| T |
43526833 |
acac-aaccaggaggtttgtgggctcaagtggtcaccctcaggacaacaattggcaagtggtggaaacgataatgt |
43526759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 13119475 - 13119308
Alignment:
| Q |
54 |
cactggcttggaacggtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacacatcgttgaaaccctcaa |
153 |
Q |
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| T |
13119475 |
cactggcatggaacaatcatattctaacaactggaggaatggatggtaagattgttaataatgatgttagagtgagatctcacattgttgaaagtttcag |
13119376 |
T |
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| Q |
154 |
gggacacgaaagaggggtttgtgagctcaaatggtcaccctctggacaacaattggcaagtggtggaa |
221 |
Q |
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| T |
13119375 |
ggcacataaaggtgaggtttgtgggctcaaatggtcaccctcaggaaagcaattggcgagtggtggaa |
13119308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 19026186 - 19026089
Alignment:
| Q |
45 |
gagtcagtgcactggcttggaacg---gtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacacatc |
139 |
Q |
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| T |
19026186 |
gagtgagttcactggcttggaacaacagtcatattctcacaacaggaggaatgaacggtaaaatagtaaataatgacgttagagtgagatctcacatc |
19026089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 20728450 - 20728547
Alignment:
| Q |
45 |
gagtcagtgcactggcttggaacg---gtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatcacacatc |
139 |
Q |
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| T |
20728450 |
gagtgagttcactggcttggaacaacagtcatattctcacaacaggaggaatgaacggtaaaatagtaaataatgacgttagagtgagatctcacatc |
20728547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 18685521 - 18685596
Alignment:
| Q |
57 |
tggcttggaacggtcatactcttacaacaggaggaatggatggtaaaatagtaaacaatgacattagagtgagatc |
132 |
Q |
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| T |
18685521 |
tggcttggaacggtcatgttctcacaacagggggtatggatggtaagattgtaaacaatgatgttagattgagatc |
18685596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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