View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0827_high_2 (Length: 506)

Name: NF0827_high_2
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0827_high_2
NF0827_high_2
[»] chr3 (4 HSPs)
chr3 (16-391)||(8264209-8264583)
chr3 (13-106)||(52496403-52496496)
chr3 (13-82)||(1744902-1744971)
chr3 (13-78)||(48895863-48895928)
[»] chr1 (2 HSPs)
chr1 (395-504)||(12583536-12583645)
chr1 (25-107)||(28623214-28623297)
[»] chr2 (4 HSPs)
chr2 (16-117)||(25473232-25473335)
chr2 (30-117)||(21770786-21770874)
chr2 (13-107)||(19011854-19011948)
chr2 (13-106)||(21625175-21625268)
[»] chr5 (5 HSPs)
chr5 (13-106)||(21166396-21166489)
chr5 (19-106)||(24114561-24114647)
chr5 (13-93)||(21171017-21171094)
chr5 (27-107)||(26344198-26344275)
chr5 (13-106)||(16809373-16809466)
[»] chr7 (4 HSPs)
chr7 (13-96)||(14628994-14629077)
chr7 (13-106)||(4587711-4587804)
chr7 (35-104)||(16663221-16663290)
chr7 (35-104)||(17637581-17637650)
[»] chr4 (2 HSPs)
chr4 (16-117)||(5628036-5628137)
chr4 (15-105)||(24476098-24476188)
[»] chr6 (4 HSPs)
chr6 (13-106)||(3634230-3634323)
chr6 (25-106)||(22259447-22259528)
chr6 (13-102)||(24203706-24203794)
chr6 (14-106)||(16434146-16434238)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 8264209 - 8264583
Alignment:
Q  16 atgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264209 atgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttatt 8264308  T
Q  116 tattgaaaacaattataaacaattggcacgtctagaggaacattcttgtgcaannnnnnnggaaagaaaattccattggttgaaagttttttctaagagt 215  Q
    ||| | |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||  |||||||||||||    
T  8264309 tatcggaaacaattataaacaattggcatgtctagaggaacattcttgtgcaatttttt-ggaaagaaaattccattggttgaaaaatttttctaagagt 8264407  T
Q  216 gttgataagagttctttcataaactaatttatgggaaagaattttcaagtgtgttgatagannnnnnnaagaaggttttcatttgtgtatgcgtttaaga 315  Q
    |||||||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||||||       ||||||||||||||||||||||||||||||||    
T  8264408 gttgataagacttctttcataaactaatttctgggaaagttttttcaagtgtgtcgatagatttttttaagaaggttttcatttgtgtatgcgtttaaga 8264507  T
Q  316 agtgacaaagtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 391  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264508 agtgacaatgtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 8264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 52496496 - 52496403
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||| |||||||||| ||||| | |||||| ||| |||| |||  |||| |||||||| ||| |   |||||||||||||||||||||||    
T  52496496 aatatgataaatattcaaatattttctaaaaaaagattgcacaacataccctaaaatttttaatttgactatgcaagtaacattttaaaactag 52496403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 1744971 - 1744902
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatc 82  Q
    ||||||||||| ||||| |||||||||||||||| ||| |||| ||| |||||  |||| || |||||||    
T  1744971 aatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatc 1744902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 48895928 - 48895863
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagttt 78  Q
    |||||||| || | ||| |||||||||| ||||| ||| |||||||||||||| ||||| ||||||    
T  48895928 aatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagttt 48895863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 395 - 504
Target Start/End: Original strand, 12583536 - 12583645
Alignment:
Q  395 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatcaatataacaagggaaacagtt 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12583536 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatgaatataacaagggaaacagtt 12583635  T
Q  495 atggattatt 504  Q
    ||||||||||    
T  12583636 atggattatt 12583645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 28623297 - 28623214
Alignment:
Q  25 attcaaacattttttg-aaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||| |||||||| |||||||||| |||| |||||  ||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  28623297 attcaaatattttttggaaaaaacattgcacaacatgttttaggatttttagtttgatctttcaagtaacatgttaaaattagc 28623214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 25473335 - 25473232
Alignment:
Q  16 atgatgaatattcaaacattttttgaaaaaa--cattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtctta 113  Q
    |||||||| ||||||||||||| ||||||||  |||| |||| |||||||||| |||| |||||| ||| ||||||||||||||||||||||| |||||     
T  25473335 atgatgaacattcaaacattttctgaaaaaaaacattgcacaacatgtcctaggatttctagtttgatcatgcaagtaacattttaaaactagtgtcttg 25473236  T
Q  114 ttta 117  Q
    ||||    
T  25473235 ttta 25473232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 21770874 - 21770786
Alignment:
Q  30 aacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaa-cattttaaaactagcgtcttattta 117  Q
    ||||||||||||||||||||| |||| | ||||||| ||| |||| ||| ||| |||||||||  | ||||||||||||||||||||||    
T  21770874 aacattttttgaaaaaacattgcacaacgtgtcctataatatttattttgatcctgcaagtaataaatttaaaactagcgtcttattta 21770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 19011948 - 19011854
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||||||| ||||||||| ||| || ||||| ||| ||||  ||||||||| |||| || ||| ||| |||||||||| ||||| |||||||    
T  19011948 aatatgatgaacattcaaacaatttctggaaaaatattgcacaatatgtcctaggatttctaatttgatcctgcaagtaaccttttagaactagc 19011854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 21625268 - 21625175
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||| |||||||||||||  | || || ||| | |  |||| |||||||||| |||||| ||| | |||||||||||||||||||||    
T  21625268 aatatgatgaacattcaaacattttcgggaacaatattgcgcgacatgccctagaatttctagtttgatcatacaagtaacattttaaaactag 21625175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 21166396 - 21166489
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||| ||||| ||||||| || |||| |||| |||| ||||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  21166396 aatatgatgaacattcatacattttctggaaaatcattgcacaacatgtcctagaatttctagtttgatcctacaagtaacattttaaaactag 21166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 24114561 - 24114647
Alignment:
Q  19 atgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||| ||||| ||||||| || |||| |||| ||||||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  24114561 atgaacattcatacattttctggaaaatcattgcacatcatgccctaggatttt-agtttaatcctgcaagtaacaatttaaaactag 24114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 21171017 - 21171094
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaac 93  Q
    ||||||||||| ||||| ||||||| || |||| |||| |||||   |||||||||||| |||||| ||| ||||||||||    
T  21171017 aatatgatgaacattcatacattttctggaaaatcattgcacat---gtcctagaatttctagtttgatcctgcaagtaac 21171094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 26344275 - 26344198
Alignment:
Q  27 tcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||| ||| || |||||||||||||||   ||||||  |||| | |||| ||| ||||||||||||||||||||||||    
T  26344275 tcaaacaatttatggaaaaacattacacat---gtcctaagatttctcgtttgatcctgcaagtaacattttaaaactagc 26344198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 16809466 - 16809373
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||||||| |||| ||||||| |   ||| |||||  || |||||| || ||||| |||||| ||| ||||| |||||||||||||||||    
T  16809466 aatatgatgaatgttcatacattttcttggaaatcattatgcaacatgtcttaaaatttctagtttgatcctgcaaataacattttaaaactag 16809373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 14628994 - 14629077
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacatt 96  Q
    ||||||||||| ||||| |||||||  | |||||| || ||||  |||||||||||||| |||||||||| |||||||||||||    
T  14628994 aatatgatgaacattcatacattttgaggaaaaaccttgcacaatatgtcctagaatttctagtttaatcctgcaagtaacatt 14629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 4587804 - 4587711
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||| ||||||||||||| |||||||| ||  |||| ||||| |||  |||| |||||||||| |||||| ||| ||| ||||||||    
T  4587804 aatatgatgaacattcaaacattttctgaaaaaagatcgcacaacatgtgctacgatttctagtttaatcttgcaagcaacgtttaaaaactag 4587711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 16663221 - 16663290
Alignment:
Q  35 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 104  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  16663221 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 16663290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 17637581 - 17637650
Alignment:
Q  35 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 104  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  17637581 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 17637650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 5628036 - 5628137
Alignment:
Q  16 atgatgaatattcaaacatttttt-gaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttat 114  Q
    |||||||| ||||||||||||| | ||||| | ||| || | ||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||||||||| |    
T  5628036 atgatgaacattcaaacattttctagaaaatatattgcaaa-catatcctaaaatttttagtttgatcctgcaagtaatattttaaaattagcgtcttgt 5628134  T
Q  115 tta 117  Q
    |||    
T  5628135 tta 5628137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 24476188 - 24476098
Alignment:
Q  15 tatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaacta 105  Q
    ||||||||| ||||||||||||| || ||||| ||| |||| |||| | |   ||||||||||| ||| |||||| |||||| ||||||||    
T  24476188 tatgatgaacattcaaacattttctggaaaaagattgcacaacatgccttgcgatttttagtttgatcctgcaagcaacattgtaaaacta 24476098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 3634323 - 3634230
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||||||| |||| ||||||| ||||||| |||| |||| |||||||||| | ||  ||||| ||| |||||||||   |||||||||||    
T  3634323 aatatgatgaatgttcatacattttctgaaaaatcattgcacaacatgtcctaggacttccagtttgatcctgcaagtaattatttaaaactag 3634230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 22259447 - 22259528
Alignment:
Q  25 attcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||||| |||||||||||| |||| |||||  ||| |||| |||||| ||| |||||| ||   |||||||||||    
T  22259447 attcaaacattttctgaaaaaacattgcacaacatgttataggatttctagtttcatcctgcaagcaattatttaaaactag 22259528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24203706 - 24203794
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaa 102  Q
    ||||||||||||||||| | ||||||||||||| |||| ||||  || |||||  |||| |||||| ||  ||||||||| |||||||||    
T  24203706 aatatgatgaatattcata-attttttgaaaaatcattgcacaatatatcctaagatttctagtttgattttgcaagtaatattttaaaa 24203794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 16434238 - 16434146
Alignment:
Q  14 atatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||| ||||| ||||| | |||||||| ||||  ||| |||| ||| || ||  |||| |||||||||| |||||| ||||||||||||||||    
T  16434238 atataatgaacattcatatattttttgtaaaatgattgcacaacatatcatatgatttctagtttaatcctgcaagcaacattttaaaactag 16434146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 504 times since January 2019
Visitors: 5839