View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0827_high_3 (Length: 493)

Name: NF0827_high_3
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0827_high_3
NF0827_high_3
[»] chr3 (4 HSPs)
chr3 (4-378)||(8264209-8264583)
chr3 (1-94)||(52496403-52496496)
chr3 (1-70)||(1744902-1744971)
chr3 (1-66)||(48895863-48895928)
[»] chr1 (2 HSPs)
chr1 (382-491)||(12583536-12583645)
chr1 (13-95)||(28623214-28623297)
[»] chr2 (4 HSPs)
chr2 (4-105)||(25473232-25473335)
chr2 (18-105)||(21770786-21770874)
chr2 (1-95)||(19011854-19011948)
chr2 (1-94)||(21625175-21625268)
[»] chr5 (5 HSPs)
chr5 (1-94)||(21166396-21166489)
chr5 (7-94)||(24114561-24114647)
chr5 (1-81)||(21171017-21171094)
chr5 (15-95)||(26344198-26344275)
chr5 (1-94)||(16809373-16809466)
[»] chr7 (4 HSPs)
chr7 (1-84)||(14628994-14629077)
chr7 (1-94)||(4587711-4587804)
chr7 (23-92)||(16663221-16663290)
chr7 (23-92)||(17637581-17637650)
[»] chr4 (2 HSPs)
chr4 (4-105)||(5628036-5628137)
chr4 (3-93)||(24476098-24476188)
[»] chr6 (4 HSPs)
chr6 (1-94)||(3634230-3634323)
chr6 (13-94)||(22259447-22259528)
chr6 (1-90)||(24203706-24203794)
chr6 (2-94)||(16434146-16434238)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 8264209 - 8264583
Alignment:
Q  4 atgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264209 atgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttatt 8264308  T
Q  104 tattgaaaacaattataaacaattggcacgtctagaggaacattcttgtgcaattttttggaaagaaaattccattggttgaaagttttttctaagagtg 203  Q
    ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  8264309 tatcggaaacaattataaacaattggcatgtctagaggaacattcttgtgcaattttttggaaagaaaattccattggttgaaaaatttttctaagagtg 8264408  T
Q  204 ttgataagagttctttcataaactaatttatgggaaagaattttcaagtgtgttgatagannnnnnnaagaaggttttcatttgtgtatgcgtttaagaa 303  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||||||       |||||||||||||||||||||||||||||||||    
T  8264409 ttgataagacttctttcataaactaatttctgggaaagttttttcaagtgtgtcgatagatttttttaagaaggttttcatttgtgtatgcgtttaagaa 8264508  T
Q  304 gtgacaaagtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 378  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264509 gtgacaatgtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 8264583  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52496496 - 52496403
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    |||||||| |||||||||| ||||| | |||||| ||| |||| |||  |||| |||||||| ||| |   |||||||||||||||||||||||    
T  52496496 aatatgataaatattcaaatattttctaaaaaaagattgcacaacataccctaaaatttttaatttgactatgcaagtaacattttaaaactag 52496403  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1744971 - 1744902
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatc 70  Q
    ||||||||||| ||||| |||||||||||||||| ||| |||| ||| |||||  |||| || |||||||    
T  1744971 aatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatc 1744902  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48895928 - 48895863
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagttt 66  Q
    |||||||| || | ||| |||||||||| ||||| ||| |||||||||||||| ||||| ||||||    
T  48895928 aatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagttt 48895863  T

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Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 12583536 - 12583645
Alignment:
Q  382 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatcaatataacaagggaaacagtt 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12583536 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatgaatataacaagggaaacagtt 12583635  T
Q  482 atggattatt 491  Q
    ||||||||||    
T  12583636 atggattatt 12583645  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 28623297 - 28623214
Alignment:
Q  13 attcaaacattttttg-aaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 95  Q
    ||||||| |||||||| |||||||||| |||| |||||  ||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  28623297 attcaaatattttttggaaaaaacattgcacaacatgttttaggatttttagtttgatctttcaagtaacatgttaaaattagc 28623214  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 25473335 - 25473232
Alignment:
Q  4 atgatgaatattcaaacattttttgaaaaaa--cattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtctta 101  Q
    |||||||| ||||||||||||| ||||||||  |||| |||| |||||||||| |||| |||||| ||| ||||||||||||||||||||||| |||||     
T  25473335 atgatgaacattcaaacattttctgaaaaaaaacattgcacaacatgtcctaggatttctagtttgatcatgcaagtaacattttaaaactagtgtcttg 25473236  T
Q  102 ttta 105  Q
    ||||    
T  25473235 ttta 25473232  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 21770874 - 21770786
Alignment:
Q  18 aacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaa-cattttaaaactagcgtcttattta 105  Q
    ||||||||||||||||||||| |||| | ||||||| ||| |||| ||| ||| |||||||||  | ||||||||||||||||||||||    
T  21770874 aacattttttgaaaaaacattgcacaacgtgtcctataatatttattttgatcctgcaagtaataaatttaaaactagcgtcttattta 21770786  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19011948 - 19011854
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 95  Q
    ||||||||||| ||||||||| ||| || ||||| ||| ||||  ||||||||| |||| || ||| ||| |||||||||| ||||| |||||||    
T  19011948 aatatgatgaacattcaaacaatttctggaaaaatattgcacaatatgtcctaggatttctaatttgatcctgcaagtaaccttttagaactagc 19011854  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21625268 - 21625175
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    ||||||||||| |||||||||||||  | || || ||| | |  |||| |||||||||| |||||| ||| | |||||||||||||||||||||    
T  21625268 aatatgatgaacattcaaacattttcgggaacaatattgcgcgacatgccctagaatttctagtttgatcatacaagtaacattttaaaactag 21625175  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21166396 - 21166489
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    ||||||||||| ||||| ||||||| || |||| |||| |||| ||||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  21166396 aatatgatgaacattcatacattttctggaaaatcattgcacaacatgtcctagaatttctagtttgatcctacaagtaacattttaaaactag 21166489  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 24114561 - 24114647
Alignment:
Q  7 atgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    ||||| ||||| ||||||| || |||| |||| ||||||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  24114561 atgaacattcatacattttctggaaaatcattgcacatcatgccctaggatttt-agtttaatcctgcaagtaacaatttaaaactag 24114647  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21171017 - 21171094
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaac 81  Q
    ||||||||||| ||||| ||||||| || |||| |||| |||||   |||||||||||| |||||| ||| ||||||||||    
T  21171017 aatatgatgaacattcatacattttctggaaaatcattgcacat---gtcctagaatttctagtttgatcctgcaagtaac 21171094  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 26344275 - 26344198
Alignment:
Q  15 tcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 95  Q
    ||||||| ||| || |||||||||||||||   ||||||  |||| | |||| ||| ||||||||||||||||||||||||    
T  26344275 tcaaacaatttatggaaaaacattacacat---gtcctaagatttctcgtttgatcctgcaagtaacattttaaaactagc 26344198  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16809466 - 16809373
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    |||||||||||| |||| ||||||| |   ||| |||||  || |||||| || ||||| |||||| ||| ||||| |||||||||||||||||    
T  16809466 aatatgatgaatgttcatacattttcttggaaatcattatgcaacatgtcttaaaatttctagtttgatcctgcaaataacattttaaaactag 16809373  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14628994 - 14629077
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacatt 84  Q
    ||||||||||| ||||| |||||||  | |||||| || ||||  |||||||||||||| |||||||||| |||||||||||||    
T  14628994 aatatgatgaacattcatacattttgaggaaaaaccttgcacaatatgtcctagaatttctagtttaatcctgcaagtaacatt 14629077  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 4587804 - 4587711
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    ||||||||||| ||||||||||||| |||||||| ||  |||| ||||| |||  |||| |||||||||| |||||| ||| ||| ||||||||    
T  4587804 aatatgatgaacattcaaacattttctgaaaaaagatcgcacaacatgtgctacgatttctagtttaatcttgcaagcaacgtttaaaaactag 4587711  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 16663221 - 16663290
Alignment:
Q  23 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 92  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  16663221 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 16663290  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 17637581 - 17637650
Alignment:
Q  23 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 92  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  17637581 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 17637650  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 5628036 - 5628137
Alignment:
Q  4 atgatgaatattcaaacatttttt-gaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgtcttat 102  Q
    |||||||| ||||||||||||| | ||||| | ||| || | ||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||||||||| |    
T  5628036 atgatgaacattcaaacattttctagaaaatatattgcaaa-catatcctaaaatttttagtttgatcctgcaagtaatattttaaaattagcgtcttgt 5628134  T
Q  103 tta 105  Q
    |||    
T  5628135 tta 5628137  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 24476188 - 24476098
Alignment:
Q  3 tatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaacta 93  Q
    ||||||||| ||||||||||||| || ||||| ||| |||| |||| | |   ||||||||||| ||| |||||| |||||| ||||||||    
T  24476188 tatgatgaacattcaaacattttctggaaaaagattgcacaacatgccttgcgatttttagtttgatcctgcaagcaacattgtaaaacta 24476098  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3634323 - 3634230
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    |||||||||||| |||| ||||||| ||||||| |||| |||| |||||||||| | ||  ||||| ||| |||||||||   |||||||||||    
T  3634323 aatatgatgaatgttcatacattttctgaaaaatcattgcacaacatgtcctaggacttccagtttgatcctgcaagtaattatttaaaactag 3634230  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 22259447 - 22259528
Alignment:
Q  13 attcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    ||||||||||||| |||||||||||| |||| |||||  ||| |||| |||||| ||| |||||| ||   |||||||||||    
T  22259447 attcaaacattttctgaaaaaacattgcacaacatgttataggatttctagtttcatcctgcaagcaattatttaaaactag 22259528  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24203706 - 24203794
Alignment:
Q  1 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaa 90  Q
    ||||||||||||||||| | ||||||||||||| |||| ||||  || |||||  |||| |||||| ||  ||||||||| |||||||||    
T  24203706 aatatgatgaatattcata-attttttgaaaaatcattgcacaatatatcctaagatttctagtttgattttgcaagtaatattttaaaa 24203794  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 16434238 - 16434146
Alignment:
Q  2 atatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 94  Q
    |||| ||||| ||||| | |||||||| ||||  ||| |||| ||| || ||  |||| |||||||||| |||||| ||||||||||||||||    
T  16434238 atataatgaacattcatatattttttgtaaaatgattgcacaacatatcatatgatttctagtttaatcctgcaagcaacattttaaaactag 16434146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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