View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0827_high_4 (Length: 394)
Name: NF0827_high_4
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 26 - 366
Target Start/End: Original strand, 36498311 - 36498646
Alignment:
| Q |
26 |
tgagatgaaagatgctggttttttcgaatcagactgggagtgatgtggtattaactgttagattagattaataagtcctctatatactaattgcaggaca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36498311 |
tgagatgaaagatgctggttttttcgaatcagactgggagtgatgtggtattaactgttagattagattaataagtcctc----tactaattgcaggaca |
36498406 |
T |
|
| Q |
126 |
tacctttcactaaatttgtaaatatgtttgtagatcgctttgtatatcctatttcggnnnnnnnnnnngtttgcagacagtaacctcattgagtg-tttg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
36498407 |
tacctttcactaaatttgtaaatatgtttgtagatcgctttgtatatcctatttcgg--aaaaaaaaagtttgcagacagtaacctccttgagtgttttg |
36498504 |
T |
|
| Q |
225 |
attggttcatcagattgcaaccaccgcaggttacatttatattgatgnnnnnnngacgaaagatatacttgggactactattatttttctttttacaata |
324 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
36498505 |
attggtttatcaaattacaaccaccgcaggttacatttatattgatgtttttttgacgaaagttatacttgggacaaccattatttttctttttacaata |
36498604 |
T |
|
| Q |
325 |
aacaacagcttaacatttcataaaacaaagaaggcaaattct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36498605 |
aacaacagcttaacatttcataaaacaaagaaggcaaattct |
36498646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 11896798 - 11896750
Alignment:
| Q |
308 |
tttttctttttacaataaacaacagcttaacatttcataaaacaaagaa |
356 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
11896798 |
tttttttttttacagtaaacaatagcttaacatttcataaaacatagaa |
11896750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 43254437 - 43254478
Alignment:
| Q |
308 |
tttttctttttacaataaacaacagcttaacatttcataaaa |
349 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
43254437 |
ttttttttttgacaataaacaatagcttaacatttcataaaa |
43254478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 4928300 - 4928348
Alignment:
| Q |
308 |
tttttctttttacaataaacaacagcttaacatttcataaaacaaagaa |
356 |
Q |
| |
|
||||| |||| ||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4928300 |
ttttttttttaacagtaaacaagagcttaacatttcataaaacatagaa |
4928348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 27430073 - 27430025
Alignment:
| Q |
308 |
tttttctttttacaataaacaacagcttaacatttcataaaacaaagaa |
356 |
Q |
| |
|
||||| |||| ||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27430073 |
ttttttttttgacagtaaacaagagcttaacatttcataaaacatagaa |
27430025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 108 times since January 2019
Visitors: 5831