View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0827_high_8 (Length: 274)

Name: NF0827_high_8
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0827_high_8
NF0827_high_8
[»] chr3 (3 HSPs)
chr3 (52-242)||(37817912-37818100)
chr3 (95-169)||(38383128-38383202)
chr3 (95-151)||(42554404-42554460)
[»] chr1 (1 HSPs)
chr1 (87-170)||(35160399-35160482)
[»] chr8 (3 HSPs)
chr8 (91-134)||(36277058-36277101)
chr8 (95-133)||(7628985-7629023)
chr8 (94-166)||(7419312-7419384)
[»] chr4 (6 HSPs)
chr4 (101-168)||(20152919-20152986)
chr4 (88-170)||(47532687-47532769)
chr4 (94-167)||(45441211-45441284)
chr4 (89-136)||(42823419-42823466)
chr4 (90-170)||(23940991-23941068)
chr4 (94-167)||(45441332-45441403)
[»] chr2 (2 HSPs)
chr2 (87-168)||(25576151-25576231)
chr2 (87-132)||(27491143-27491188)
[»] chr5 (1 HSPs)
chr5 (87-148)||(7138988-7139049)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 52 - 242
Target Start/End: Original strand, 37817912 - 37818100
Alignment:
Q  52 ctgtgttctttatcaaagtattannnnnnngcaagtgtgatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttaca 151  Q
    |||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37817912 ctgtgttctt-atcaaagtattatttttttgcaagtgtgatctttataattatatattaatgaagaatgatcaatgtatattccttt-gtgtattttaca 37818009  T
Q  152 tgaatataagttttattatnnnnnnnttggtaaagcgtttaagttgtatcctatcttcattcttgaattttaaaatatttgcatatctgtg 242  Q
    |||||||||||||||||||       |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37818010 tgaatataagttttattataaaaaaattggtaaagcatctaagttgtatcctatcttcattcttgaatttaaaaatatttgcatatctgtg 37818100  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 38383128 - 38383202
Alignment:
Q  95 ttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttatta 169  Q
    ||||||||||||||||||||||||| ||||||| || ||  || |  |||||||||||| | |||| ||||||||    
T  38383128 ttataattatatattaatgaagaatcatcaatgaatcttttttacaagtattttacatgtacataatttttatta 38383202  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 42554404 - 42554460
Alignment:
Q  95 ttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttaca 151  Q
    |||||||||||||||||| |||||  ||||||| ||||||| |||  ||||||||||    
T  42554404 ttataattatatattaattaagaacaatcaatgcatattccattcaagtattttaca 42554460  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 35160399 - 35160482
Alignment:
Q  87 tgtgatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttattat 170  Q
    |||||||||||||||||||||||||  |||| | ||||||| ||||| |||||  ||||||||||||  |||||||||||||||    
T  35160399 tgtgatctttataattatatattaactaagagtaatcaatgcatatttctttcaagtattttacatgtttataagttttattat 35160482  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 36277058 - 36277101
Alignment:
Q  91 atctttataattatatattaatgaagaatgatcaatgtatattc 134  Q
    |||||||||||||||||||||  |||||||||||||||||||||    
T  36277058 atctttataattatatattaacaaagaatgatcaatgtatattc 36277101  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 7628985 - 7629023
Alignment:
Q  95 ttataattatatattaatgaagaatgatcaatgtatatt 133  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  7628985 ttataattatatattaatgaagaataatcaatgcatatt 7629023  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 7419384 - 7419312
Alignment:
Q  94 tttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagtttta 166  Q
    |||||||||||||||||||||||| | ||| |||  |||| |||||   ||||||||||| |||||| |||||    
T  7419384 tttataattatatattaatgaagattaatcgatgcttatttctttcaaatattttacatgcatataaatttta 7419312  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 20152919 - 20152986
Alignment:
Q  101 ttatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttatt 168  Q
    ||||||| |||| |||||||||||||| |||||  |||| |||||||||| | |||||||||||||||    
T  20152919 ttatatactaataaagaatgatcaatgcatatttatttcatgtattttacgtaaatataagttttatt 20152986  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 47532687 - 47532769
Alignment:
Q  88 gtgatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttattat 170  Q
    ||||||||||||||||||||||||  || ||| |||||| |||||| |||||  |||||||||||   |||||| ||||||||    
T  47532687 gtgatctttataattatatattaagaaataataatcaatatatatttctttcaagtattttacatacgtataagctttattat 47532769  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 45441211 - 45441284
Alignment:
Q  94 tttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttat 167  Q
    |||||||||||||| ||| |||||  |||||||  ||||| | ||| ||||||||||||| |||||||||||||    
T  45441211 tttataattatatactaacgaagagcgatcaatagatattacattcatgtattttacatgcatataagttttat 45441284  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 42823466 - 42823419
Alignment:
Q  89 tgatctttataattatatattaatgaagaatgatcaatgtatattcct 136  Q
    |||| |||||||||||||||||||||| |||| |||||| ||||||||    
T  42823466 tgatatttataattatatattaatgaaaaatgttcaatgcatattcct 42823419  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 23941068 - 23940991
Alignment:
Q  90 gatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttattat 170  Q
    ||||||||||||||||||||| |||| ||| |||||    |||| |||||  |||||||||||| ||||||| ||||||||    
T  23941068 gatctttataattatatattactgaaaaataatcaa---gtatttctttcaagtattttacatgcatataagatttattat 23940991  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 45441332 - 45441403
Alignment:
Q  94 tttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttat 167  Q
    ||||||||||||||| |||||| |||||||||||   ||| | ||| ||||||||||| | |||||||||||||    
T  45441332 tttataattatatatcaatgaacaatgatcaatg--cattacattcatgtattttacacgcatataagttttat 45441403  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 25576151 - 25576231
Alignment:
Q  87 tgtgatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtattttacatgaatataagttttatt 168  Q
    ||||| ||||||||||| ||||| ||||||| | ||||||| | |||  |||||||||||||||||  ||||||||||||||    
T  25576151 tgtgagctttataattacatatttatgaagagtaatcaatgcacattt-tttcgtgtattttacatacatataagttttatt 25576231  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 27491143 - 27491188
Alignment:
Q  87 tgtgatctttataattatatattaatgaagaatgatcaatgtatat 132  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||    
T  27491143 tgtgatatttataattatatattaatgaagaatattcaatgtatat 27491188  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 7139049 - 7138988
Alignment:
Q  87 tgtgatctttataattatatattaatgaagaatgatcaatgtatattcctttcgtgtatttt 148  Q
    |||||| |||||| ||||||||||||||| ||||||  ||| ||||| ||||| ||||||||    
T  7139049 tgtgatttttatagttatatattaatgaaaaatgattgatgcatatttctttcttgtatttt 7138988  T

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