View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_1 (Length: 711)
Name: NF0827_low_1
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 19694730 - 19694325
Alignment:
| Q |
30 |
actgctcactagagcacaatttagtcttagtgttacgataacccctacatttttatagtttgtctttatttctccttaatttcacttcgattataaattt |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19694730 |
actgctcactagaggacaatttagtcttagtgttacgataacccctacatttttatagtttgtctttatttctccttaatttcacttcgattataaattt |
19694631 |
T |
|
| Q |
130 |
gtgctcttaatttgaaatggattttgggacttttaaagcagctgtcaagcaatgtagctactgcgttcatgttctctaaatagagaagctttattatttc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19694630 |
gtgctcttaatttgaaatggattttgggacttttaaaccagctgtcaagcaatgtagctactgcgttcatgttctctaaatagagaagctttattatttc |
19694531 |
T |
|
| Q |
230 |
tttcatgttataactaattctcaaaagtttcttgttggagatcaatacctcttggttctcactgatatgatatgtctctcgatagaaaaacatacttcat |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19694530 |
tttcatgttataactaattctcaaaagtttcttgttggagatcaatacctcttggttctcactga-----tatgtctctcgatagaaaaacatacttcat |
19694436 |
T |
|
| Q |
330 |
taataaatttgttgcaatcttgaattctttgttatatctgtctctgattaatttgtttactgacaaatatgtcgatgaaagaattggtaaatcggtttta |
429 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19694435 |
taataaatttgttgcaatcttgaattctttgttgtatctgtctctgatt-atttgtttactgacaaatatgtcgatgaaagaattggtaaatcggtttta |
19694337 |
T |
|
| Q |
430 |
actaccgaggaa |
441 |
Q |
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||| |||||||| |
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| T |
19694336 |
actgccgaggaa |
19694325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 49 - 421
Target Start/End: Original strand, 44823877 - 44824263
Alignment:
| Q |
49 |
tttagtcttagtgttacgataacccctacatttttatagtt----tgtctttatttctccttaatttcacttcgattataaatttgtgctcttaatttga |
144 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44823877 |
tttagtcttagtgttacaataatccctacattttaatagttggcttgtctttatttctccttaatttca--tcgattataaatttgtgctcttaatttga |
44823974 |
T |
|
| Q |
145 |
aatggattttgggacttttaaa----------------gcagctgtcaagcaatgtagctactgcgttcatgttctctaaatagagaagctttattattt |
228 |
Q |
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||| |||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
44823975 |
aatcgattttgggactttgaaatatttatttgtccagagcagctgtcgagcaatgtagctactgccttcatgttctctaaatagagaagctttactattt |
44824074 |
T |
|
| Q |
229 |
ctttcatgttataactaattctcaaaagtttcttgttggagatcaatacctcttggttctcactgatatgatatgtctctcgatagaaaaacatacttca |
328 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||| |
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| T |
44824075 |
ctttcatgttataactaattctcaaaagcttcttgttggagatcaatacctcttggttctcactgatatg---tcactctagatagaataacatacttca |
44824171 |
T |
|
| Q |
329 |
ttaataaatttgttgcaatcttgaattctttgttatatctgtctctgattaatttgtttactgacaaatatgtcgatgaaagaattggtaaat |
421 |
Q |
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| |||||||||||||| ||||||||||||||| | | | ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
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| T |
44824172 |
tcaataaatttgttgccatcttgaattctttgctgtgtatgtctctgatt-atctgtttactgacaaatatgtcgatgaaagaattggcaaat |
44824263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 461 - 646
Target Start/End: Complemental strand, 3668360 - 3668175
Alignment:
| Q |
461 |
atggtgaacaagggtaattgtggaaattggaattgatttgtttttgtggggttgtgtggaactggctatgttctgcttgattcttttgca-tatggtgtg |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
3668360 |
atggtgaacaagggtaattgtggaaattggaattgatttgtttttgtggggttgtgtggaactggctatgttctgcttgattcttttgcattttggtgtg |
3668261 |
T |
|
| Q |
560 |
aaactaaaaatgaggtgaaaagtttatgcttgtttagattggattggtttatatgttttgaaataataataacaagcatgtgtcttg |
646 |
Q |
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|||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3668260 |
aaactaaagatgaggtgaaaagtttatgcttg-ttaaattggattggtttatatgttttgaaataataacaacaagcatgtgtcttg |
3668175 |
T |
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