View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_12 (Length: 374)
Name: NF0827_low_12
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 96 - 374
Target Start/End: Complemental strand, 3816795 - 3816516
Alignment:
| Q |
96 |
ctaattttctaaacagttgaaggaacaaaagcaagctgcaattgacgagcctttagggtgacaagctccagaagtagagtcttccacgttaatacactga |
195 |
Q |
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| T |
3816795 |
ctaattttctaaacagttgaaggaacaaaagcaagctgcgattgacgagcctttagggtgacaagctccagaagtagagtcttccatgttaatacactga |
3816696 |
T |
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| Q |
196 |
tctttacagctttcattctctgaacaaggtcctgaccatgttacactgcgcctttgacaaagattcccttgtacctctatacgcaagaacaatatatgag |
295 |
Q |
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| T |
3816695 |
tgtttacagctttcattctctaaacaaggtcctgaccatgttacactgcgcctttgacaaagattcccttgtacctctatacgcaagaacaatatatgag |
3816596 |
T |
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| Q |
296 |
atatataatatagggagaggtcaccttctaaac-nnnnnnnnnacaagctttaaatttccttcatcactctatataaaga |
374 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
3816595 |
atatatattatagggagaggtcaccttctaaacttttttttttacaagctttaaatttctttcatcactctatataaaga |
3816516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 3852643 - 3852536
Alignment:
| Q |
96 |
ctaattttctaaacagttgaaggaacaaaagcaagctgcaattgacgagcctttagggtgacaagctccagaagtagagtcttccacgttaatacactga |
195 |
Q |
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|||||||||| | ||||||||||||||||||||||| ||| |||| |||| | || |||||| || ||| |||||| || |||||| || || |||||| |
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| T |
3852643 |
ctaattttcttagcagttgaaggaacaaaagcaagcgtcaaatgacaagccatcagtgtgacatgccccaaaagtagcgtgttccacattgatgcactga |
3852544 |
T |
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| Q |
196 |
tctttaca |
203 |
Q |
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| T |
3852543 |
tttttaca |
3852536 |
T |
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