View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_15 (Length: 270)
Name: NF0827_low_15
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 437962 - 438204
Alignment:
| Q |
28 |
acaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattca |
127 |
Q |
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| T |
437962 |
acaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattca |
438061 |
T |
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| Q |
128 |
agtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcatt |
227 |
Q |
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| T |
438062 |
agtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcatt |
438161 |
T |
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| Q |
228 |
agccgagttgtatatatcttcgtgaatggttgcatagtttgac |
270 |
Q |
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| T |
438162 |
agccgagttgtatatatcttcgtgaatggttgcatagtttgac |
438204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 28608942 - 28608707
Alignment:
| Q |
28 |
acaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattca |
127 |
Q |
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| T |
28608942 |
acaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattca |
28608843 |
T |
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| Q |
128 |
agtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcatt |
227 |
Q |
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| T |
28608842 |
agtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgtt |
28608743 |
T |
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| Q |
228 |
agccgagttgtatatatcttcgtgaatggttgcata |
263 |
Q |
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| T |
28608742 |
aactaaattgtatatgtcttcgtgaatggttgcata |
28608707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 13652813 - 13652577
Alignment:
| Q |
28 |
acaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattca |
127 |
Q |
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| T |
13652813 |
acaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcacattca |
13652714 |
T |
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| Q |
128 |
agtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcatt |
227 |
Q |
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| T |
13652713 |
ggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgtgtttttcatt |
13652614 |
T |
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| Q |
228 |
agccgagttgtatatatcttcgtgaatggttgcatag |
264 |
Q |
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| T |
13652613 |
agctgaattatatatgtcctcgtgaatggttgcatag |
13652577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 13660311 - 13660077
Alignment:
| Q |
30 |
aaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaag |
129 |
Q |
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| T |
13660311 |
aaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctgg |
13660212 |
T |
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| Q |
130 |
tttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcattag |
229 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||| | ||||| ||||| | ||||||||||| |
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| T |
13660211 |
tttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattag |
13660112 |
T |
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| Q |
230 |
ccgagttgtatatatcttcgtgaatggttgcatag |
264 |
Q |
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| T |
13660111 |
cagagttatatatgtcctcatgaatggttgaatag |
13660077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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