View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0827_low_16 (Length: 265)
Name: NF0827_low_16
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_16 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 48044210 - 48043944
Alignment:
| Q |
30 |
atttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaaatggcatgtcacaatctgcatcacaaat--------------------agaat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48044210 |
atttaccagcaaataaaatgaataaaagagtgatggcacgtcaccaaatggcatgtcacaatctgcatcacaaatcccctccgaaagctacaaatagaat |
48044111 |
T |
|
| Q |
110 |
caattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcgaaa----------ctactacctaatttgaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
48044110 |
caattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcggaaggagcacctactactacctaatttgaact |
48044011 |
T |
|
| Q |
200 |
tcatttagatcatttatatggccaggtatcacagaggacaattatcatccatt-ttttgtgctggaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48044010 |
tcatttagatcatttatatggccaggtatcacagaggacaattatcatccatttttttgtgctggaa |
48043944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 48051905 - 48051839
Alignment:
| Q |
30 |
atttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaaatggcatgtcacaatctgca |
96 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48051905 |
attttccagcaaataaaatgaataaaagagtgatggcacgtcaccaaatggcatgtcacaatctgca |
48051839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 48057306 - 48057247
Alignment:
| Q |
112 |
attgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttg |
171 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||| |||| |||||||| |
|
|
| T |
48057306 |
attgcatcaatgtgaaaactattaggatgatattgtttcatcaattttgtagcaaacttg |
48057247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 492 times since January 2019
Visitors: 5839