View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_19 (Length: 251)
Name: NF0827_low_19
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_19 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 438469 - 438231
Alignment:
| Q |
13 |
atactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
112 |
Q |
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| T |
438469 |
atactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
438370 |
T |
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| Q |
113 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacatt |
212 |
Q |
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| T |
438369 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcatt |
438270 |
T |
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| Q |
213 |
accaatacctttgaagcattcaaagaggcatatgatgct |
251 |
Q |
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| T |
438269 |
accaatacctttgaagcattcaaagaggcatatgatgct |
438231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 28608435 - 28608673
Alignment:
| Q |
13 |
atactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgt |
112 |
Q |
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| T |
28608435 |
atactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcgt |
28608534 |
T |
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| Q |
113 |
tggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacatt |
212 |
Q |
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| T |
28608535 |
tggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagtatt |
28608634 |
T |
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| Q |
213 |
accaatacctttgaagcattcaaagaggcatatgatgct |
251 |
Q |
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| T |
28608635 |
gataataaatttgaagcactcagagaggcatatgatgct |
28608673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 13659821 - 13660044
Alignment:
| Q |
28 |
caggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgc |
127 |
Q |
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|||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| || |||||| |||||| |
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| T |
13659821 |
caggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaactcaaaggacgtactggtgc |
13659920 |
T |
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| Q |
128 |
ccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaa |
227 |
Q |
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| T |
13659921 |
acttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagcattaataatacatttgaa |
13660020 |
T |
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| Q |
228 |
gcattcaaagaggcatatgatgct |
251 |
Q |
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||| | |||||||||||||||| |
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| T |
13660021 |
gcacttggagaggcatatgatgct |
13660044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 13652322 - 13652525
Alignment:
| Q |
29 |
aggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcc |
128 |
Q |
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||||||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| |
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| T |
13652322 |
aggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
13652421 |
T |
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| Q |
129 |
cttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaag |
228 |
Q |
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| T |
13652422 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
13652521 |
T |
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| Q |
229 |
catt |
232 |
Q |
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|||| |
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| T |
13652522 |
catt |
13652525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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