View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_2 (Length: 509)
Name: NF0827_low_2
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 50140613 - 50140968
Alignment:
| Q |
28 |
tggagtaaaaggtcattttgatttgtgagtttgtgattcttttttgaatgaaaaatgttagttgttagattaatatttactcatttgtcggatttaaatt |
127 |
Q |
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| T |
50140613 |
tggagtaaaaggtcattttgatttgtgagtttgtgattcttttttgaatgataaatgtttgttgttagattaatatttcctcatttgtcgggtttaaatt |
50140712 |
T |
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| Q |
128 |
taagatcttcaacttcttatcgtttaactcacatcagtttagctacccaacccc-aattgcgagtgtgtgatgttgtcactctaattgcaaataccttct |
226 |
Q |
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| T |
50140713 |
taagatctccaacttcttatcgtttaactcacatcaatttagctacccaacccccaattgcgagtgtgtgatgttgtcactctaattgcaaataccttct |
50140812 |
T |
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| Q |
227 |
tagagcctcttatgttataatatttttcaattaaatcaactaacgaagaacacatttgaagattaaattaacaacttaaaaacatatatgtagactaaaa |
326 |
Q |
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| T |
50140813 |
tagagcctcttatgttataatatttttcaattaaatcaactaacgaagaacacatttgaagattaaattaacaatttaaaaacatatatgtagactaaaa |
50140912 |
T |
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| Q |
327 |
tgactaattaaatatatatttgaagatgtgtttacaattttgagatatcagtgaac |
382 |
Q |
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| T |
50140913 |
tgactaatcaaatatatatttaaaaatgtgtttacaattttgatacatccgtgaac |
50140968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 387 - 496
Target Start/End: Original strand, 12583536 - 12583645
Alignment:
| Q |
387 |
agaacctgtgcaagaaaatcttcaaaagaatatatgatttagttcgaatagcacaaatgtagcaagaagttcatagatcaatataacaagggaaacagtt |
486 |
Q |
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| T |
12583536 |
agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatgaatataacaagggaaacagtt |
12583635 |
T |
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| Q |
487 |
atggattatt |
496 |
Q |
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| T |
12583636 |
atggattatt |
12583645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 44751944 - 44751978
Alignment:
| Q |
82 |
atgttagttgttagattaatatttactcatttgtc |
116 |
Q |
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| T |
44751944 |
atgttagtggttagattaatatttactcatttgtc |
44751978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 17080025 - 17079986
Alignment:
| Q |
84 |
gttagttgttagattaatatttactcatttgtcggattta |
123 |
Q |
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| T |
17080025 |
gttagttgttacattaatatttactcatttgtcgggttta |
17079986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 9834623 - 9834665
Alignment:
| Q |
67 |
ttttttgaatgaaaaatgttagttgttagattaatatttactc |
109 |
Q |
| |
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| T |
9834623 |
ttttttgaatgacatatgttagttgttaggttaatatttactc |
9834665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 12020170 - 12020125
Alignment:
| Q |
67 |
ttttttgaatgaaaaatgttagttgttagattaatatttactcatt |
112 |
Q |
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||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
12020170 |
ttttttgaatggcaaatgttaatagttagattaatatttactcatt |
12020125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 13380506 - 13380474
Alignment:
| Q |
84 |
gttagttgttagattaatatttactcatttgtc |
116 |
Q |
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| T |
13380506 |
gttagttgttagattaatatttactcttttgtc |
13380474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 18148762 - 18148807
Alignment:
| Q |
71 |
ttgaatgaaaaatgttagttgttagattaatatttactcatttgtc |
116 |
Q |
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| T |
18148762 |
ttgaatgacaaatgttaattattagaataatatttactcatttgtc |
18148807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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