View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0827_low_4 (Length: 506)

Name: NF0827_low_4
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0827_low_4
NF0827_low_4
[»] chr3 (4 HSPs)
chr3 (10-391)||(8264203-8264583)
chr3 (12-106)||(52496403-52496497)
chr3 (12-78)||(48895863-48895929)
chr3 (13-82)||(1744902-1744971)
[»] chr1 (2 HSPs)
chr1 (395-504)||(12583536-12583645)
chr1 (25-107)||(28623214-28623297)
[»] chr2 (4 HSPs)
chr2 (10-117)||(25473232-25473341)
chr2 (30-117)||(21770786-21770874)
chr2 (13-107)||(19011854-19011948)
chr2 (12-106)||(21625175-21625269)
[»] chr5 (5 HSPs)
chr5 (10-106)||(21166393-21166489)
chr5 (19-106)||(24114561-24114647)
chr5 (10-93)||(21171014-21171094)
chr5 (12-106)||(16809373-16809467)
chr5 (27-107)||(26344198-26344275)
[»] chr7 (4 HSPs)
chr7 (12-96)||(14628993-14629077)
chr7 (12-106)||(4587711-4587805)
chr7 (35-104)||(16663221-16663290)
chr7 (35-104)||(17637581-17637650)
[»] chr4 (2 HSPs)
chr4 (10-117)||(5628030-5628137)
chr4 (15-105)||(24476098-24476188)
[»] chr6 (4 HSPs)
chr6 (12-106)||(3634230-3634324)
chr6 (12-102)||(24203705-24203794)
chr6 (25-106)||(22259447-22259528)
chr6 (14-106)||(16434146-16434238)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 8264203 - 8264583
Alignment:
Q  10 aagaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264203 aagaacatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcgt 8264302  T
Q  110 cttatttattgaaaacaattataaacaattggcacgtctagaggaacattcttgtgcaannnnnnnggaaagaaaattccattggttgaaagttttttct 209  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||  |||||||    
T  8264303 cttatttatcggaaacaattataaacaattggcatgtctagaggaacattcttgtgcaatttttt-ggaaagaaaattccattggttgaaaaatttttct 8264401  T
Q  210 aagagtgttgataagagttctttcataaactaatttatgggaaagaattttcaagtgtgttgatagannnnnnnaagaaggttttcatttgtgtatgcgt 309  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||||||       ||||||||||||||||||||||||||    
T  8264402 aagagtgttgataagacttctttcataaactaatttctgggaaagttttttcaagtgtgtcgatagatttttttaagaaggttttcatttgtgtatgcgt 8264501  T
Q  310 ttaagaagtgacaaagtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 391  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8264502 ttaagaagtgacaatgtccttccaaaaatggctcgtcctaattcaacaaataattcatctgcatcaaatacacaaagtaacg 8264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 52496497 - 52496403
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||| |||||||||| ||||| | |||||| ||| |||| |||  |||| |||||||| ||| |   |||||||||||||||||||||||    
T  52496497 gaatatgataaatattcaaatattttctaaaaaaagattgcacaacataccctaaaatttttaatttgactatgcaagtaacattttaaaactag 52496403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 48895929 - 48895863
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagttt 78  Q
    ||||||||| || | ||| |||||||||| ||||| ||| |||||||||||||| ||||| ||||||    
T  48895929 gaatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagttt 48895863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 1744971 - 1744902
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatc 82  Q
    ||||||||||| ||||| |||||||||||||||| ||| |||| ||| |||||  |||| || |||||||    
T  1744971 aatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatc 1744902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 395 - 504
Target Start/End: Original strand, 12583536 - 12583645
Alignment:
Q  395 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatcaatataacaagggaaacagtt 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12583536 agaacctgtgcaagaaaatcttcaaaagaatatatgatttagtttgaatagcacaaatgtagcaagaagttcatagatgaatataacaagggaaacagtt 12583635  T
Q  495 atggattatt 504  Q
    ||||||||||    
T  12583636 atggattatt 12583645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 28623297 - 28623214
Alignment:
Q  25 attcaaacattttttg-aaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||| |||||||| |||||||||| |||| |||||  ||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  28623297 attcaaatattttttggaaaaaacattgcacaacatgttttaggatttttagtttgatctttcaagtaacatgttaaaattagc 28623214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 25473341 - 25473232
Alignment:
Q  10 aagaatatgatgaatattcaaacattttttgaaaaaa--cattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||| |||||||| ||||||||||||| ||||||||  |||| |||| |||||||||| |||| |||||| ||| |||||||||||||||||||||||     
T  25473341 aagaacatgatgaacattcaaacattttctgaaaaaaaacattgcacaacatgtcctaggatttctagtttgatcatgcaagtaacattttaaaactagt 25473242  T
Q  108 gtcttattta 117  Q
    ||||| ||||    
T  25473241 gtcttgttta 25473232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 21770874 - 21770786
Alignment:
Q  30 aacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaa-cattttaaaactagcgtcttattta 117  Q
    ||||||||||||||||||||| |||| | ||||||| ||| |||| ||| ||| |||||||||  | ||||||||||||||||||||||    
T  21770874 aacattttttgaaaaaacattgcacaacgtgtcctataatatttattttgatcctgcaagtaataaatttaaaactagcgtcttattta 21770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 19011948 - 19011854
Alignment:
Q  13 aatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||||||| ||||||||| ||| || ||||| ||| ||||  ||||||||| |||| || ||| ||| |||||||||| ||||| |||||||    
T  19011948 aatatgatgaacattcaaacaatttctggaaaaatattgcacaatatgtcctaggatttctaatttgatcctgcaagtaaccttttagaactagc 19011854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 21625269 - 21625175
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||||||| |||||||||||||  | || || ||| | |  |||| |||||||||| |||||| ||| | |||||||||||||||||||||    
T  21625269 gaatatgatgaacattcaaacattttcgggaacaatattgcgcgacatgccctagaatttctagtttgatcatacaagtaacattttaaaactag 21625175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 21166393 - 21166489
Alignment:
Q  10 aagaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||||||||| ||||| ||||||| || |||| |||| |||| ||||||||||||||| |||||| ||| | |||||||||||||||||||||    
T  21166393 aagaatatgatgaacattcatacattttctggaaaatcattgcacaacatgtcctagaatttctagtttgatcctacaagtaacattttaaaactag 21166489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 24114561 - 24114647
Alignment:
Q  19 atgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||| ||||| ||||||| || |||| |||| ||||||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  24114561 atgaacattcatacattttctggaaaatcattgcacatcatgccctaggatttt-agtttaatcctgcaagtaacaatttaaaactag 24114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 21171014 - 21171094
Alignment:
Q  10 aagaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaac 93  Q
    |||||||||||||| ||||| ||||||| || |||| |||| |||||   |||||||||||| |||||| ||| ||||||||||    
T  21171014 aagaatatgatgaacattcatacattttctggaaaatcattgcacat---gtcctagaatttctagtttgatcctgcaagtaac 21171094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 16809467 - 16809373
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||||| |||| ||||||| |   ||| |||||  || |||||| || ||||| |||||| ||| ||||| |||||||||||||||||    
T  16809467 gaatatgatgaatgttcatacattttcttggaaatcattatgcaacatgtcttaaaatttctagtttgatcctgcaaataacattttaaaactag 16809373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 26344275 - 26344198
Alignment:
Q  27 tcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagc 107  Q
    ||||||| ||| || |||||||||||||||   ||||||  |||| | |||| ||| ||||||||||||||||||||||||    
T  26344275 tcaaacaatttatggaaaaacattacacat---gtcctaagatttctcgtttgatcctgcaagtaacattttaaaactagc 26344198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 14628993 - 14629077
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacatt 96  Q
    |||||||||||| ||||| |||||||  | |||||| || ||||  |||||||||||||| |||||||||| |||||||||||||    
T  14628993 gaatatgatgaacattcatacattttgaggaaaaaccttgcacaatatgtcctagaatttctagtttaatcctgcaagtaacatt 14629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 4587805 - 4587711
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||||||||||| ||||||||||||| |||||||| ||  |||| ||||| |||  |||| |||||||||| |||||| ||| ||| ||||||||    
T  4587805 gaatatgatgaacattcaaacattttctgaaaaaagatcgcacaacatgtgctacgatttctagtttaatcttgcaagcaacgtttaaaaactag 4587711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 16663221 - 16663290
Alignment:
Q  35 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 104  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  16663221 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 16663290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 17637581 - 17637650
Alignment:
Q  35 tttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaact 104  Q
    |||| ||| ||||||| |||  ||||||||||||||| || ||| ||  |||||||||||||||||||||    
T  17637581 ttttagaagaaacattgcacgacatgtcctagaatttctattttgattctgcaagtaacattttaaaact 17637650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 5628030 - 5628137
Alignment:
Q  10 aagaatatgatgaatattcaaacatttttt-gaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactagcg 108  Q
    ||||| |||||||| ||||||||||||| | ||||| | ||| || | ||| ||||| |||||||||||| ||| ||||||||| ||||||||| |||||    
T  5628030 aagaacatgatgaacattcaaacattttctagaaaatatattgcaaa-catatcctaaaatttttagtttgatcctgcaagtaatattttaaaattagcg 5628128  T
Q  109 tcttattta 117  Q
    |||| ||||    
T  5628129 tcttgttta 5628137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 24476188 - 24476098
Alignment:
Q  15 tatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaacta 105  Q
    ||||||||| ||||||||||||| || ||||| ||| |||| |||| | |   ||||||||||| ||| |||||| |||||| ||||||||    
T  24476188 tatgatgaacattcaaacattttctggaaaaagattgcacaacatgccttgcgatttttagtttgatcctgcaagcaacattgtaaaacta 24476098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 3634324 - 3634230
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||||| |||| ||||||| ||||||| |||| |||| |||||||||| | ||  ||||| ||| |||||||||   |||||||||||    
T  3634324 gaatatgatgaatgttcatacattttctgaaaaatcattgcacaacatgtcctaggacttccagtttgatcctgcaagtaattatttaaaactag 3634230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 24203705 - 24203794
Alignment:
Q  12 gaatatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaa 102  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||  || |||||  |||| |||||| ||  ||||||||| |||||||||    
T  24203705 gaatatgatgaatattcata-attttttgaaaaatcattgcacaatatatcctaagatttctagtttgattttgcaagtaatattttaaaa 24203794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 22259447 - 22259528
Alignment:
Q  25 attcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    ||||||||||||| |||||||||||| |||| |||||  ||| |||| |||||| ||| |||||| ||   |||||||||||    
T  22259447 attcaaacattttctgaaaaaacattgcacaacatgttataggatttctagtttcatcctgcaagcaattatttaaaactag 22259528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 16434238 - 16434146
Alignment:
Q  14 atatgatgaatattcaaacattttttgaaaaaacattacacatcatgtcctagaatttttagtttaatcgtgcaagtaacattttaaaactag 106  Q
    |||| ||||| ||||| | |||||||| ||||  ||| |||| ||| || ||  |||| |||||||||| |||||| ||||||||||||||||    
T  16434238 atataatgaacattcatatattttttgtaaaatgattgcacaacatatcatatgatttctagtttaatcctgcaagcaacattttaaaactag 16434146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University