View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0827_low_6 (Length: 443)
Name: NF0827_low_6
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0827_low_6 |
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[»] scaffold1862 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 9458663 - 9458742
Alignment:
Q |
215 |
actaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatcaccacaataaataaaaagaacacatagcac |
294 |
Q |
|
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
T |
9458663 |
actaaatttcaaccgtttaatttagttgatcgtgcggtttaaattatatcaccacaagaaataaaaagaacacattgcac |
9458742 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 22405303 - 22405342
Alignment:
Q |
94 |
acaaccattaattattattaaaatcaaaggtcaagatttg |
133 |
Q |
|
|
|||||||||||||||||||||||| || |||||||||||| |
|
|
T |
22405303 |
acaaccattaattattattaaaatgaatggtcaagatttg |
22405342 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 52413690 - 52413621
Alignment:
Q |
167 |
atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatt |
236 |
Q |
|
|
||||| |||||||||| ||||||| |||||||||||| |||||| || |||||||||||| |||||| |
|
|
T |
52413690 |
atatagagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatt |
52413621 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 53993694 - 53993662
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||| ||||||||||||||| |
|
|
T |
53993694 |
agacttactcttggagttaatggatcccttctc |
53993662 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 53994468 - 53994500
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
|||||||||| |||||||||||||||||||||| |
|
|
T |
53994468 |
agacttactcctggagtcaatggatcccttctc |
53994500 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 45384544 - 45384485
Alignment:
Q |
73 |
taaggattaatgcaatagattacaaccattaattattattaaaatcaaaggtcaagattt |
132 |
Q |
|
|
|||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||| |
|
|
T |
45384544 |
taaggattaatgcaatagatcataacaattaattattattaaaattaaaggtcaagattt |
45384485 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 1477956 - 1478044
Alignment:
Q |
176 |
caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc |
264 |
Q |
|
|
||||||| ||||||| ||||||||||||| |||||| || |||||| ||||||| |||||| ||||| || ||||||||||||||| |
|
|
T |
1477956 |
caggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc |
1478044 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 35597589 - 35597501
Alignment:
Q |
176 |
caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc |
264 |
Q |
|
|
||||||| ||||||| ||||||||||||| || ||| || |||||| ||||||| |||||| ||||| || ||||||||||||||| |
|
|
T |
35597589 |
caggatccgttgacaccaggtgtaagtcaaaagatttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc |
35597501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 34082959 - 34082900
Alignment:
Q |
169 |
atatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc |
228 |
Q |
|
|
||||||||| |||| ||||||| |||||||||||||| |||||| || ||||||||||| |
|
|
T |
34082959 |
atatagacaagatccgttgacactaggtgtaagtcattagacttacaccaaatctcaacc |
34082900 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 1159071 - 1159129
Alignment:
Q |
173 |
agacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt |
231 |
Q |
|
|
|||||| ||| ||||||||||||||||||||| |||||| || |||||||||||||| |
|
|
T |
1159071 |
agacagtatccgttgacatcaggtgtaagtcaaaagacttacaccaaatctcaaccgtt |
1159129 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 29981298 - 29981265
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcata |
169 |
Q |
|
|
|||||||||| ||||||||||||||||||||||| |
|
|
T |
29981298 |
acttactcttagagtcaatggatcccttctcata |
29981265 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 1478615 - 1478551
Alignment:
Q |
167 |
atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt |
231 |
Q |
|
|
||||| || ||||||| ||||||| ||||||||||||| |||||| || |||||||||||||| |
|
|
T |
1478615 |
atatagagtcaggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatctcaaccgtt |
1478551 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 5389703 - 5389664
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
T |
5389703 |
agacttactcttggagtcaatggatcccttctcatatata |
5389664 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 5390188 - 5390220
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |
|
|
T |
5390188 |
agacttactctaggagtcaatggatcccttctc |
5390220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 39296769 - 39296737
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcat |
168 |
Q |
|
|
|||||||||||||||||||||||| |||||||| |
|
|
T |
39296769 |
acttactcttggagtcaatggatcacttctcat |
39296737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 13225243 - 13225282
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
T |
13225243 |
agacttactcttggagtcaatggatcccttctcatatata |
13225282 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 11324782 - 11324750
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
11324782 |
agacttactcttggagtcaatggatcccttctc |
11324750 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 13220912 - 13220880
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
13220912 |
agacttactcttggagtcaatggatcccttctc |
13220880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 10092489 - 10092432
Alignment:
Q |
184 |
gttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagtt |
241 |
Q |
|
|
||||||| ||| |||||||||| |||||| |||||||||||||| || ||||||||| |
|
|
T |
10092489 |
gttgacaccagatgtaagtcataagacttacactaaatctcaaccattaaatttagtt |
10092432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 24624565 - 24624617
Alignment:
Q |
177 |
aggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccg |
229 |
Q |
|
|
|||||| |||||||| |||||||||| ||| |||||| || |||||||||||| |
|
|
T |
24624565 |
aggatctgttgacattaggtgtaagtaattagacttacaccaaatctcaaccg |
24624617 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 19186570 - 19186488
Alignment:
Q |
36 |
tgtgatgtttaggaggagtagtataaaaggttgacattaaggattaatgcaatagattacaaccattaattattattaaaatcaaagg |
123 |
Q |
|
|
||||||||||||||| || |||||||||||| | |||||||||||||||||| |||||| ||||||| ||||||||||||||| |
|
|
T |
19186570 |
tgtgatgtttaggagaaggcgtataaaaggttca-----aggattaatgcaatagatcacaacctttaattactattaaaatcaaagg |
19186488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 42948196 - 42948230
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcat |
168 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |
|
|
T |
42948196 |
agacttactcttggagtcaatggatcccttctcat |
42948230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 8609229 - 8609193
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcatatat |
172 |
Q |
|
|
||||||||||||||||||||||||||| ||| ||||| |
|
|
T |
8609229 |
acttactcttggagtcaatggatccctcctcttatat |
8609193 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 15269735 - 15269696
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
T |
15269735 |
agacttactcttggagtcaatggatcccttctcatatata |
15269696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 40872953 - 40872914
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
T |
40872953 |
agacttactcttggagtcaatggatcccttctcatatata |
40872914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 15274071 - 15274103
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
15274071 |
agacttactcttggagtcaatggatcccttctc |
15274103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 40877291 - 40877322
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttct |
165 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
40877291 |
agacttactcttggagtcaatggatcccttct |
40877322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31897997 - 31898034
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||| |||||||||||||||| |||||||||| |
|
|
T |
31897997 |
acttactcttagagtcaatggatccctcctcatatata |
31898034 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31913706 - 31913743
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||| |||||||||||||||| |||||||||| |
|
|
T |
31913706 |
acttactcttagagtcaatggatccctcctcatatata |
31913743 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31947354 - 31947391
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||| |||||||||||||||| |||||||||| |
|
|
T |
31947354 |
acttactcttagagtcaatggatccctcctcatatata |
31947391 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 7772015 - 7772051
Alignment:
Q |
167 |
atatatagacaggatcagttgacatcaggtgtaagtc |
203 |
Q |
|
|
|||||||||||||||| ||||||| |||||||||||| |
|
|
T |
7772015 |
atatatagacaggatccgttgacaccaggtgtaagtc |
7772051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 47171457 - 47171369
Alignment:
Q |
176 |
caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc |
264 |
Q |
|
|
||||||| ||||||| ||||||||||||| |||||| || |||||| ||||||| |||||| ||||| || ||||||||||||||| |
|
|
T |
47171457 |
caggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc |
47171369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 10233223 - 10233262
Alignment:
Q |
250 |
ggtttaaattatatcaccacaataaataaaaagaacacat |
289 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
T |
10233223 |
ggtttaaattatatcaccaccataaataaaaagaacacat |
10233262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 9268888 - 9268952
Alignment:
Q |
167 |
atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt |
231 |
Q |
|
|
||||||| ||||||| ||||||| |||||||||||||| | ||||| || |||||||||||||| |
|
|
T |
9268888 |
atatataagcaggatccgttgacaccaggtgtaagtcatataacttacaccaaatctcaaccgtt |
9268952 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 12263381 - 12263413
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
12263381 |
agacttactcttggagtcaatggatcccttctc |
12263413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 16664263 - 16664224
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
T |
16664263 |
agacttactcttggagtcaatggatcttttctcatatata |
16664224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 17638633 - 17638594
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
T |
17638633 |
agacttactcttggagtcaatggatcttttctcatatata |
17638594 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 40461922 - 40461971
Alignment:
Q |
179 |
gatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc |
228 |
Q |
|
|
|||| ||||||||||||||||| || ||||||||| || ||||||||||| |
|
|
T |
40461922 |
gatctgttgacatcaggtgtaactcttttgacttacaccaaatctcaacc |
40461971 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 528939 - 528902
Alignment:
Q |
136 |
acttactcttggagtcaatggatcccttctcatatata |
173 |
Q |
|
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
T |
528939 |
acttactcttggagtccatggatcccttctcatatata |
528902 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 3666868 - 3666948
Alignment:
Q |
184 |
gttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc |
264 |
Q |
|
|
||||||| ||||||||||||| |||||| || |||||| ||||||| |||||| ||||| || ||||||||||||||| |
|
|
T |
3666868 |
gttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc |
3666948 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 8194294 - 8194326
Alignment:
Q |
134 |
agacttactcttggagtcaatggatcccttctc |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||| |
|
|
T |
8194294 |
agacttactcttggagtcaatggatcccttctc |
8194326 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 18883922 - 18883873
Alignment:
Q |
179 |
gatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc |
228 |
Q |
|
|
|||| ||||||| ||||||||||||||||||||| || ||||||||||| |
|
|
T |
18883922 |
gatccgttgacaccaggtgtaagtcatttgacttgcaccaaatctcaacc |
18883873 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1862 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1862
Description:
Target: scaffold1862; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 100 - 31
Alignment:
Q |
167 |
atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatt |
236 |
Q |
|
|
||||| |||||||||| ||||||| |||||||||||| |||||| || |||||||||||| |||||| |
|
|
T |
100 |
atatagagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatt |
31 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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