View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0827_low_6 (Length: 443)

Name: NF0827_low_6
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0827_low_6
NF0827_low_6
[»] chr4 (5 HSPs)
chr4 (215-294)||(9458663-9458742)
chr4 (94-133)||(22405303-22405342)
chr4 (167-236)||(52413621-52413690)
chr4 (134-166)||(53993662-53993694)
chr4 (134-166)||(53994468-53994500)
[»] chr1 (7 HSPs)
chr1 (73-132)||(45384485-45384544)
chr1 (176-264)||(1477956-1478044)
chr1 (176-264)||(35597501-35597589)
chr1 (169-228)||(34082900-34082959)
chr1 (173-231)||(1159071-1159129)
chr1 (136-169)||(29981265-29981298)
chr1 (167-231)||(1478551-1478615)
[»] chr8 (3 HSPs)
chr8 (134-173)||(5389664-5389703)
chr8 (134-166)||(5390188-5390220)
chr8 (136-168)||(39296737-39296769)
[»] chr6 (5 HSPs)
chr6 (134-173)||(13225243-13225282)
chr6 (134-166)||(11324750-11324782)
chr6 (134-166)||(13220880-13220912)
chr6 (184-241)||(10092432-10092489)
chr6 (177-229)||(24624565-24624617)
[»] chr5 (3 HSPs)
chr5 (36-123)||(19186488-19186570)
chr5 (134-168)||(42948196-42948230)
chr5 (136-172)||(8609193-8609229)
[»] chr3 (8 HSPs)
chr3 (134-173)||(15269696-15269735)
chr3 (134-173)||(40872914-40872953)
chr3 (134-166)||(15274071-15274103)
chr3 (134-165)||(40877291-40877322)
chr3 (136-173)||(31897997-31898034)
chr3 (136-173)||(31913706-31913743)
chr3 (136-173)||(31947354-31947391)
chr3 (167-203)||(7772015-7772051)
[»] chr7 (7 HSPs)
chr7 (176-264)||(47171369-47171457)
chr7 (250-289)||(10233223-10233262)
chr7 (167-231)||(9268888-9268952)
chr7 (134-166)||(12263381-12263413)
chr7 (134-173)||(16664224-16664263)
chr7 (134-173)||(17638594-17638633)
chr7 (179-228)||(40461922-40461971)
[»] chr2 (4 HSPs)
chr2 (136-173)||(528902-528939)
chr2 (184-264)||(3666868-3666948)
chr2 (134-166)||(8194294-8194326)
chr2 (179-228)||(18883873-18883922)
[»] scaffold1862 (1 HSPs)
scaffold1862 (167-236)||(31-100)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 9458663 - 9458742
Alignment:
215 actaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatcaccacaataaataaaaagaacacatagcac 294  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
9458663 actaaatttcaaccgtttaatttagttgatcgtgcggtttaaattatatcaccacaagaaataaaaagaacacattgcac 9458742  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 22405303 - 22405342
Alignment:
94 acaaccattaattattattaaaatcaaaggtcaagatttg 133  Q
    |||||||||||||||||||||||| || ||||||||||||    
22405303 acaaccattaattattattaaaatgaatggtcaagatttg 22405342  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 52413690 - 52413621
Alignment:
167 atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatt 236  Q
    ||||| |||||||||| ||||||| ||||||||||||    |||||| || |||||||||||| ||||||    
52413690 atatagagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatt 52413621  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 53993694 - 53993662
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    ||||||||||||||||| |||||||||||||||    
53993694 agacttactcttggagttaatggatcccttctc 53993662  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 53994468 - 53994500
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||| ||||||||||||||||||||||    
53994468 agacttactcctggagtcaatggatcccttctc 53994500  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 45384544 - 45384485
Alignment:
73 taaggattaatgcaatagattacaaccattaattattattaaaatcaaaggtcaagattt 132  Q
    |||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
45384544 taaggattaatgcaatagatcataacaattaattattattaaaattaaaggtcaagattt 45384485  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 1477956 - 1478044
Alignment:
176 caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc 264  Q
    ||||||| ||||||| |||||||||||||   |||||| || |||||| ||||||| |||||| ||||| ||  |||||||||||||||    
1477956 caggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc 1478044  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 35597589 - 35597501
Alignment:
176 caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc 264  Q
    ||||||| ||||||| |||||||||||||   || ||| || |||||| ||||||| |||||| ||||| ||  |||||||||||||||    
35597589 caggatccgttgacaccaggtgtaagtcaaaagatttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc 35597501  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 34082959 - 34082900
Alignment:
169 atatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc 228  Q
    ||||||||| |||| |||||||  |||||||||||||| |||||| || |||||||||||    
34082959 atatagacaagatccgttgacactaggtgtaagtcattagacttacaccaaatctcaacc 34082900  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 1159071 - 1159129
Alignment:
173 agacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt 231  Q
    |||||| ||| |||||||||||||||||||||   |||||| || ||||||||||||||    
1159071 agacagtatccgttgacatcaggtgtaagtcaaaagacttacaccaaatctcaaccgtt 1159129  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 29981298 - 29981265
Alignment:
136 acttactcttggagtcaatggatcccttctcata 169  Q
    |||||||||| |||||||||||||||||||||||    
29981298 acttactcttagagtcaatggatcccttctcata 29981265  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 1478615 - 1478551
Alignment:
167 atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt 231  Q
    ||||| || ||||||| ||||||| |||||||||||||   |||||| || ||||||||||||||    
1478615 atatagagtcaggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatctcaaccgtt 1478551  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 5389703 - 5389664
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||||||||||||||||    
5389703 agacttactcttggagtcaatggatcccttctcatatata 5389664  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 5390188 - 5390220
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    ||||||||||| |||||||||||||||||||||    
5390188 agacttactctaggagtcaatggatcccttctc 5390220  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 39296769 - 39296737
Alignment:
136 acttactcttggagtcaatggatcccttctcat 168  Q
    |||||||||||||||||||||||| ||||||||    
39296769 acttactcttggagtcaatggatcacttctcat 39296737  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 13225243 - 13225282
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||||||||||||||||    
13225243 agacttactcttggagtcaatggatcccttctcatatata 13225282  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 11324782 - 11324750
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||||||||||||||||||||||||||    
11324782 agacttactcttggagtcaatggatcccttctc 11324750  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 13220912 - 13220880
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||||||||||||||||||||||||||    
13220912 agacttactcttggagtcaatggatcccttctc 13220880  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 10092489 - 10092432
Alignment:
184 gttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagtt 241  Q
    ||||||| ||| ||||||||||  |||||| |||||||||||||| || |||||||||    
10092489 gttgacaccagatgtaagtcataagacttacactaaatctcaaccattaaatttagtt 10092432  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 24624565 - 24624617
Alignment:
177 aggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccg 229  Q
    |||||| |||||||| |||||||||| ||| |||||| || ||||||||||||    
24624565 aggatctgttgacattaggtgtaagtaattagacttacaccaaatctcaaccg 24624617  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 19186570 - 19186488
Alignment:
36 tgtgatgtttaggaggagtagtataaaaggttgacattaaggattaatgcaatagattacaaccattaattattattaaaatcaaagg 123  Q
    ||||||||||||||| ||  |||||||||||| |     |||||||||||||||||| |||||| ||||||| |||||||||||||||    
19186570 tgtgatgtttaggagaaggcgtataaaaggttca-----aggattaatgcaatagatcacaacctttaattactattaaaatcaaagg 19186488  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 42948196 - 42948230
Alignment:
134 agacttactcttggagtcaatggatcccttctcat 168  Q
    |||||||||||||||||||||||||||||||||||    
42948196 agacttactcttggagtcaatggatcccttctcat 42948230  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 8609229 - 8609193
Alignment:
136 acttactcttggagtcaatggatcccttctcatatat 172  Q
    ||||||||||||||||||||||||||| ||| |||||    
8609229 acttactcttggagtcaatggatccctcctcttatat 8609193  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 15269735 - 15269696
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||||||||||||||||    
15269735 agacttactcttggagtcaatggatcccttctcatatata 15269696  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 40872953 - 40872914
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||||||||||||||||    
40872953 agacttactcttggagtcaatggatcccttctcatatata 40872914  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 15274071 - 15274103
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||||||||||||||||||||||||||    
15274071 agacttactcttggagtcaatggatcccttctc 15274103  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 40877291 - 40877322
Alignment:
134 agacttactcttggagtcaatggatcccttct 165  Q
    ||||||||||||||||||||||||||||||||    
40877291 agacttactcttggagtcaatggatcccttct 40877322  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31897997 - 31898034
Alignment:
136 acttactcttggagtcaatggatcccttctcatatata 173  Q
    |||||||||| |||||||||||||||| ||||||||||    
31897997 acttactcttagagtcaatggatccctcctcatatata 31898034  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31913706 - 31913743
Alignment:
136 acttactcttggagtcaatggatcccttctcatatata 173  Q
    |||||||||| |||||||||||||||| ||||||||||    
31913706 acttactcttagagtcaatggatccctcctcatatata 31913743  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 31947354 - 31947391
Alignment:
136 acttactcttggagtcaatggatcccttctcatatata 173  Q
    |||||||||| |||||||||||||||| ||||||||||    
31947354 acttactcttagagtcaatggatccctcctcatatata 31947391  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 7772015 - 7772051
Alignment:
167 atatatagacaggatcagttgacatcaggtgtaagtc 203  Q
    |||||||||||||||| ||||||| ||||||||||||    
7772015 atatatagacaggatccgttgacaccaggtgtaagtc 7772051  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 47171457 - 47171369
Alignment:
176 caggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc 264  Q
    ||||||| ||||||| |||||||||||||   |||||| || |||||| ||||||| |||||| ||||| ||  |||||||||||||||    
47171457 caggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc 47171369  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 10233223 - 10233262
Alignment:
250 ggtttaaattatatcaccacaataaataaaaagaacacat 289  Q
    |||||||||||||||||||| |||||||||||||||||||    
10233223 ggtttaaattatatcaccaccataaataaaaagaacacat 10233262  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 9268888 - 9268952
Alignment:
167 atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtt 231  Q
    |||||||  ||||||| ||||||| |||||||||||||| | ||||| || ||||||||||||||    
9268888 atatataagcaggatccgttgacaccaggtgtaagtcatataacttacaccaaatctcaaccgtt 9268952  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 12263381 - 12263413
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||||||||||||||||||||||||||    
12263381 agacttactcttggagtcaatggatcccttctc 12263413  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 16664263 - 16664224
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||  ||||||||||||    
16664263 agacttactcttggagtcaatggatcttttctcatatata 16664224  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 17638633 - 17638594
Alignment:
134 agacttactcttggagtcaatggatcccttctcatatata 173  Q
    ||||||||||||||||||||||||||  ||||||||||||    
17638633 agacttactcttggagtcaatggatcttttctcatatata 17638594  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 40461922 - 40461971
Alignment:
179 gatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc 228  Q
    |||| ||||||||||||||||| || ||||||||| || |||||||||||    
40461922 gatctgttgacatcaggtgtaactcttttgacttacaccaaatctcaacc 40461971  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 528939 - 528902
Alignment:
136 acttactcttggagtcaatggatcccttctcatatata 173  Q
    |||||||||||||||| |||||||||||||||||||||    
528939 acttactcttggagtccatggatcccttctcatatata 528902  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 3666868 - 3666948
Alignment:
184 gttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatttagttgattgtgcggtttaaattatatc 264  Q
    ||||||| |||||||||||||   |||||| || |||||| ||||||| |||||| ||||| ||  |||||||||||||||    
3666868 gttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaattgatcgtatggtttaaattatatc 3666948  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 8194294 - 8194326
Alignment:
134 agacttactcttggagtcaatggatcccttctc 166  Q
    |||||||||||||||||||||||||||||||||    
8194294 agacttactcttggagtcaatggatcccttctc 8194326  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 18883922 - 18883873
Alignment:
179 gatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaacc 228  Q
    |||| ||||||| |||||||||||||||||||||  || |||||||||||    
18883922 gatccgttgacaccaggtgtaagtcatttgacttgcaccaaatctcaacc 18883873  T

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Target: scaffold1862 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 100 - 31
Alignment:
167 atatatagacaggatcagttgacatcaggtgtaagtcatttgacttatactaaatctcaaccgtttaatt 236  Q
    ||||| |||||||||| ||||||| ||||||||||||    |||||| || |||||||||||| ||||||    
100 atatagagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatt 31  T

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