View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0827_low_7 (Length: 420)
Name: NF0827_low_7
Description: NF0827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0827_low_7 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: scaffold0402 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 99 - 343
Target Start/End: Original strand, 8463 - 8703
Alignment:
| Q |
99 |
cattctccttgccgcctccaaattccttcaacctgaaatcttcagctcnnnnnnnnnnaatcccattacttccaagttgaactttcaatttatgttgcct |
198 |
Q |
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| T |
8463 |
cattctccttgccgcctccaaattccttcaacctgaagtcttcagctctcttt-----aatccccttacttccaagttgaactttcaatttatgttgcct |
8557 |
T |
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| Q |
199 |
ctgatccgtacagacaaaacagctttttccccaagttgtttctttttgaggttgcttactatacccaccgcctcattcatttgtcttttgcgctgccttt |
298 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
8558 |
ctgatccgtacagacaaaacagcttttttcccaagttgtttctttttgaggttgcttactgtacccaccgcctcattcatttgtcttttgcgctgcctct |
8657 |
T |
|
| Q |
299 |
tccttgatta-cttcacctgtatcattctcttgtgcaacagctagg |
343 |
Q |
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|||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
8658 |
tccttgattattttcacctgtatcattctcttgtgcagcaactagg |
8703 |
T |
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