View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0828_high_3 (Length: 395)
Name: NF0828_high_3
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0828_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 22467117 - 22466951
Alignment:
| Q |
5 |
tagaattagaatttagttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcact |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22467117 |
tagaattagaatttagttgtaactattttgcttaagtttaagtgagttagttatgattgaatgatgtaaggatcacaatagtttataatcatccttcact |
22467018 |
T |
|
| Q |
105 |
gaattgctataaatatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta |
171 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22467017 |
gaattgctataaatacatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta |
22466951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 270 - 384
Target Start/End: Complemental strand, 22466852 - 22466738
Alignment:
| Q |
270 |
gttaactcaatatggtatcatgagccttttaatatgaaagtacttcttctgcaagcnnnnnnnccatggcacctcgcaacaacaatagtgcaacaaactc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22466852 |
gttaactcaatatggtatcatgagcctttcaatatgaaagtacttctttcgcaagcttttcttccatggcacctcgcaacaacaatagtgcaacaaactc |
22466753 |
T |
|
| Q |
370 |
tggagcacaggttct |
384 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22466752 |
tggagcacaggttct |
22466738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4537942 - 4537795
Alignment:
| Q |
20 |
gttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaata |
119 |
Q |
| |
|
||||| |||| ||| |||||||||||| ||||||||||||||||| ||| | |||||| |||||||| ||| |||||||| | | ||||||| |
|
|
| T |
4537942 |
gttgtgactacttttcttaagtttaggaaagttagttatgattgagtgaggcgaagatcacggtagtttatgccgatctatcactgaaatacaataaata |
4537843 |
T |
|
| Q |
120 |
tatgtaattgcttttattgcaagttaaaatg-aaataatggttcattg |
166 |
Q |
| |
|
||||||| ||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
4537842 |
cttgtaattacttctattgcaagttacgatgaaaataatggttcattg |
4537795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 27908678 - 27908549
Alignment:
| Q |
41 |
tttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgca |
140 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
27908678 |
tttagggaagttagttatgatagagtgaagcaaggatcacaatagtt-ataatagtccttcactgaaaagctataaatacatgtaattgcttctattgca |
27908580 |
T |
|
| Q |
141 |
agttaaaatgaaataatggttcattgaacta |
171 |
Q |
| |
|
| |||| ||||| ||||||||||||||||| |
|
|
| T |
27908579 |
aattaatgtgaaaaaatggttcattgaacta |
27908549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 29997619 - 29997762
Alignment:
| Q |
26 |
actattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgta |
125 |
Q |
| |
|
|||| |||||| | ||||||| |||||||||||||| | ||| | | ||||||| |||||||| | ||| |||||||| | | |||| || ||||| |
|
|
| T |
29997619 |
actactttgctcatgtttaggaaagttagttatgatacagtgaggtgaagatcacagtagtttatgctgatctatcactgaaataccataagtacatgta |
29997718 |
T |
|
| Q |
126 |
attgcttttattgcaagttaaaatgaaataatggttcattgaac |
169 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
29997719 |
attgcttctattacaagttaatgtgaaataatggttcattgaac |
29997762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 4368904 - 4368973
Alignment:
| Q |
21 |
ttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttat |
90 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||||| ||| || | ||||||||||| |||| |
|
|
| T |
4368904 |
ttgtaactactttgcttatgtttatggaagttagttatgattgagtgagatgaagatcacaatagcttat |
4368973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 31037200 - 31037149
Alignment:
| Q |
274 |
actcaatatggtatcatgagccttttaatatgaaagtacttcttctgcaagc |
325 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||| |||||||||||||| |
|
|
| T |
31037200 |
actcaatatggtatcatgatccttttgatctgaaagtgcttcttctgcaagc |
31037149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 688 times since January 2019
Visitors: 6034