View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0828_low_1 (Length: 768)
Name: NF0828_low_1
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0828_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 181 - 758
Target Start/End: Original strand, 8245726 - 8246303
Alignment:
| Q |
181 |
ctaaccattgtagttaatcaggtctaacacaactctacaaaatttattattattattcatatccatnnnnnnntatgtcacgaagttcattaactaatca |
280 |
Q |
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| T |
8245726 |
ctaaccattgtagttaatcaggcctaacacaactctacaaaatttattattatt---catatccataaaataatatgtcacgaagttcgttaattaataa |
8245822 |
T |
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| Q |
281 |
caaagaaaagaataacacaacaccccggattatt--gagtgaaatcgcgtgaaaagtgaatgacatgctgcgatgtacaaagtgaataacgagcatactt |
378 |
Q |
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| T |
8245823 |
caaagaaaagaataacacaacaccctgaattattcagagtgaaatcgtgcgaaaagtgaatgacatgctgcattgtacaaagtgaataacgagcatactt |
8245922 |
T |
|
| Q |
379 |
ccannnnnnnaccaacctctcttagtaaagttctataaaattgatcatcgttgttaagattcctttagtgttctttaatcgctcacatggtatcaaattt |
478 |
Q |
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||| |||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8245923 |
ccattttctcaccaacctctcttaataaagttctacgaagttgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggtatcaaattt |
8246022 |
T |
|
| Q |
479 |
ggaatcatttgcatgtacttcaccataagtccatactt----attctccctgctcaaattgcgttatttttcttcgctgttagcttttgccaacttcgtt |
574 |
Q |
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| T |
8246023 |
ggaatcatttgcatgtacttcaccataagtccatacttattgattctccctgctcaaattgcgttatttttcttcgttgttagcttttgccagcttcgtt |
8246122 |
T |
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| Q |
575 |
tatcnnnnnnnnagacttgtattctctacagtggttgcacaatgcaataattataatagtgaagaccattaaatctagaaagagaaatttatttcactaa |
674 |
Q |
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| T |
8246123 |
tatcttttttttagacttgtattctctaca---gttgcacaatgcaataattataatagtgaagaccattaaatctagaaagagaaatttatttcactaa |
8246219 |
T |
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| Q |
675 |
atctaatgatgtccacaactactacacactatatccgttgtaagggataaataaaccttttctcatttcttcatctgccctttg |
758 |
Q |
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| T |
8246220 |
atctaatgatgtccacaactactacacactatatctgttgtaagggataaataaaccttttctcatttcttcatctgccctttg |
8246303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 8245576 - 8245653
Alignment:
| Q |
32 |
tgcacggcgcagctagtggcaccgggtggcaatcggccaagaagcacagccatggtgattgaataaaagtaattgaga |
109 |
Q |
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| T |
8245576 |
tgcacggcgcagctagtggcaccgggtggcaatcggccaagaagcacagccatggtgattgaataaaagtaattgaga |
8245653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 8447442 - 8447520
Alignment:
| Q |
391 |
caacctctcttagtaaagttctataaaattgatcatcgttgttaagattcctttagtgttctttaatcgctcacatggt |
469 |
Q |
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|||||||||||| ||||||||||||| ||||||||| |||||||||||| ||| || || |||||| ||||||||||| |
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| T |
8447442 |
caacctctcttaataaagttctataacattgatcattgttgttaagatttcttcaggattatttaattgctcacatggt |
8447520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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