View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0828_low_12 (Length: 241)
Name: NF0828_low_12
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0828_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 28584775 - 28584640
Alignment:
| Q |
5 |
tctttactccctctgttcttgttgaggtttactccaagaatgtggctagttttgtgaacaatggattttgtgccattgcgactctcttgtctctccttat |
104 |
Q |
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| T |
28584775 |
tctttactctctctgttcttgttgaggtttactccaaaaatgtggctagttttgtgaacaatggattttgtgccattgcgactctcttgtctctccttat |
28584676 |
T |
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| Q |
105 |
tgaagtggttcatctgcttcctgctatggagcacat |
140 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28584675 |
tgaagtggttcatctgcttcctgctatggagcacat |
28584640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 28418484 - 28418628
Alignment:
| Q |
14 |
cctctgttcttgttgaggttt-actccaagaatgtggctagttttgtgaacaatggattttgtgccattgcgactctcttgtctctccttattgaagtgg |
112 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
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| T |
28418484 |
cctctgttcttgttgaggttttactccacgaatgtggctagttttgtgaacaatgaatcttgtgccattgcgactctcgggtctctccttattgaagtgg |
28418583 |
T |
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| Q |
113 |
ttcatctgcttcctgctatggagcacatgcctctctttctcacat |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418584 |
ttcatctgcttcctgctatggagcacatgcctctctttctcacat |
28418628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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