View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0828_low_3 (Length: 532)

Name: NF0828_low_3
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0828_low_3
NF0828_low_3
[»] chr4 (3 HSPs)
chr4 (17-254)||(55759942-55760179)
chr4 (292-504)||(55759617-55759827)
chr4 (453-504)||(55759501-55759552)
[»] chr2 (2 HSPs)
chr2 (87-277)||(38939537-38939723)
chr2 (365-469)||(38939923-38940029)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 55760179 - 55759942
Alignment:
Q  17 caaagggaaaacataaagattgacttctaataaactcatctcattcagatgtgcctttctttcctttgccttttgtttctttgttttgtaacccagctga 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  55760179 caaagggaaaacagaaagattgacttctaataaactcatctcattcagatgtgcctttctttcctttgccttttgtttctctgttttgtaacccatctga 55760080  T
Q  117 gtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcacttaaatcatatcacatatacatcttataactat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55760079 gtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcacttaaatcatatcacatatacatcttataactat 55759980  T
Q  217 taattttatgaaatttaatcttatgcttgatgaatcaa 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55759979 taattttatgaaatttaatcttatgcttgatgaatcaa 55759942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 292 - 504
Target Start/End: Complemental strand, 55759827 - 55759617
Alignment:
Q  292 tcttcttcaacattcatcgtgaaacctttcaagcattgctttctctcatccaagaaacggtttaagtgttttcattttctggtaacattcattatcgcta 391  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55759827 tcttcttcaacattcatcgtgaaacctt-caagcattgctttctctcatccaagaaacggtttcagtgttttcattttctggtaacattcattatcgcta 55759729  T
Q  392 tttgcttttcgttttcatgactccttattgatgatgatgaatctttacggtaacattcatcatcattatttcgttttcatgaatgcttgttcatgatgct 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55759728 tttgcttttcgttttcatgactccttattgatgatgatgaatctttacggtaacattcatcatcattatttcgtttt-atgaatgcttgttcatgatgct 55759630  T
Q  492 gatgaatcttcct 504  Q
    |||||||||||||    
T  55759629 gatgaatcttcct 55759617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 55759552 - 55759501
Alignment:
Q  453 atcattatttcgttttcatgaatgcttgttcatgatgctgatgaatcttcct 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55759552 atcattatttcgttttcatgaatgcttgttcatgatgctgatgaatcttcct 55759501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 38939537 - 38939723
Alignment:
Q  87 ttttgtttctttgttttgtaacccagctgagtctgagttctctttgctccaatttcatttattgttttttccctcaatatttcttccttcttttcactta 186  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  38939537 ttttgtttctctgttttgtaacccagctgagtttgagttctctttgcaccgatttcatttattgttttttccctcagtatctcttccttc-tttcactta 38939635  T
Q  187 aatcatatcacatatacatcttataactattaattttatgaaa-tttaatcttatgcttgatgaatcaaaatgaataatactacaaggccaa 277  Q
    ||||| |||||  ||||||||||||| ||| |||||||||||| ||||||||||||||| |  | |||||||||||||||||||||||||||    
T  38939636 aatcaaatcac--atacatcttataa-tataaattttatgaaattttaatcttatgctt-actattcaaaatgaataatactacaaggccaa 38939723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 38939923 - 38940029
Alignment:
Q  365 attttctggtaacattcattatcgctatttgc-ttttcgttttca-tgactccttattgatgatgatgaatctttacggtaacattcatcatcattattt 462  Q
    |||||| |||||||||| |||||||||||| | |||||||||||  ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  38939923 attttcaggtaacattcgttatcgctattttccttttcgttttccgtgaatccttgttgatgatgatgaatctctacggtaacattcatcatcattactt 38940022  T
Q  463 cgttttc 469  Q
    |||||||    
T  38940023 cgttttc 38940029  T

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