View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0828_low_4 (Length: 469)
Name: NF0828_low_4
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0828_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 10857144 - 10857480
Alignment:
| Q |
14 |
agagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccctggg |
113 |
Q |
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| T |
10857144 |
agagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccagactttgtttctaaaagatttatcaaagctaaggtgcttttaccctggg |
10857243 |
T |
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| Q |
114 |
aagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaaccaaat |
213 |
Q |
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| T |
10857244 |
aagttttccttgtgctttccatccttggagaaagtgtccttgattcaatgcatctggatgaaaactttcagtccagtcaacatgatagatccgaccaaat |
10857343 |
T |
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| Q |
214 |
tgtcttc---agttacat---tcgaagatgcaacactacgatgggaaggtgatctgaattctacaatacgcaagaggtttgaggaaaaggtatgtacagg |
307 |
Q |
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| T |
10857344 |
tgtcttctggagttacattcatcaaagataaaaccccacaatgggaaggtgatctgaatgctacaatacgcaagaggtttgaggaagaggtatctacaaa |
10857443 |
T |
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| Q |
308 |
atcaataacatatatactcttttggttgttgatcaaa |
344 |
Q |
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| T |
10857444 |
atcaataacatatatactcttacagttgttgatcaaa |
10857480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 10888647 - 10888944
Alignment:
| Q |
14 |
agagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccctggg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10888647 |
agagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccgcactttgtttctaaaagatttatcaaagctaaggtgcttttattctggg |
10888746 |
T |
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| Q |
114 |
aagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaaccaaat |
213 |
Q |
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| T |
10888747 |
aagttttccttgtgctttccatccttggagaaagtgtccttgattctatgcatctcgatgaatactttcagtccagtcaacgagatagatccaaccaaat |
10888846 |
T |
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| Q |
214 |
tgtctt------cagttacattcga-agatgcaacactacgatgggaaggtgatctgaattctacaatacgcaagaggtttgaggaaaaggtatgtaca |
305 |
Q |
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| T |
10888847 |
tgtattatggaggagttagattccacacaggtga-accacaatgggaagttgatctgaattctacaatacgcaagtgggttgaggaagaggtatgtaca |
10888944 |
T |
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