View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0828_low_9 (Length: 314)

Name: NF0828_low_9
Description: NF0828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0828_low_9
NF0828_low_9
[»] chr4 (2 HSPs)
chr4 (29-302)||(4384375-4384648)
chr4 (151-302)||(24068876-24069027)
[»] chr7 (4 HSPs)
chr7 (142-203)||(22603756-22603817)
chr7 (123-212)||(21205979-21206068)
chr7 (123-212)||(21854209-21854298)
chr7 (151-200)||(22635357-22635406)
[»] chr3 (1 HSPs)
chr3 (122-302)||(25093180-25093360)
[»] chr5 (1 HSPs)
chr5 (121-302)||(29554554-29554735)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 4384648 - 4384375
Alignment:
Q  29 atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattgctttatatcgaatcgaataaaataagtaattttacctgg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  4384648 atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattactttatatcaaatcgaataaaataagtatttttacctgg 4384549  T
Q  129 attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384548 attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt 4384449  T
Q  229 ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384448 ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc 4384375  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 302
Target Start/End: Original strand, 24068876 - 24069027
Alignment:
Q  151 gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactc 250  Q
    ||||||||||||||||  || ||| ||||||| ||||| ||||||||||||||||| ||||||||    |  ||| |  ||  || | |||||||||  |    
T  24068876 gcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaacaagattaaactttgcagggtcactactagcattaaaatttccaaaac 24068975  T
Q  251 ctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc 302  Q
    ||  |||||||||||||||||| || ||||||||||| | ||||||||||||    
T  24068976 cttgaccaacaacaaagaaattaaatccatgaagatgcaaaggatgactctc 24069027  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 22603817 - 22603756
Alignment:
Q  142 aatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaac 203  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  22603817 aatctaatggcaacccaaccaccagcaggaacaccaacagtgttcctttcaacaggatcaac 22603756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21206068 - 21205979
Alignment:
Q  123 acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa 212  Q
    |||||||||||| |||  |||||| || |||||||| ||||||| ||| |||||||| || ||||||||||| |||||||||||||||||    
T  21206068 acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacgggatcaacaaggttaaa 21205979  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21854298 - 21854209
Alignment:
Q  123 acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa 212  Q
    |||||||||||| |||  |||||| || |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||| |||||    
T  21854298 acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacaggatcaacaagattaaa 21854209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 22635357 - 22635406
Alignment:
Q  151 gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatc 200  Q
    |||||||| ||||||||||| |||||| |||| |||||||| ||||||||    
T  22635357 gcaacccatccaccagctggaacaccagcagtattcctttcgacaggatc 22635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 302
Target Start/End: Complemental strand, 25093360 - 25093180
Alignment:
Q  122 tacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttga 221  Q
    ||||||||||||||||  ||||||| || |||  |||||| |||||||| ||||| || || ||||| || |||||||||||||| |||||||| |||      
T  25093360 tacctggattatcagccttgaatctgatagcagtccaacctccagctggaacacctactgtattcctctccacaggatcaacaagattaaacttttttac 25093261  T
Q  222 atcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc 302  Q
    ||| ||||||  |||| | || ||   ||| |||||||| ||||||||||| || ||||||||||||| ||||||| ||||    
T  25093260 atcctttttagaatcaaagttgccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatgattctc 25093180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 29554735 - 29554554
Alignment:
Q  121 ttacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttg 220  Q
    ||||||||||||||||| |||||||| || |||  ||| ||||||| ||| |||||||| || || || || ||||||||||| |  |||||||| || |    
T  29554735 ttacctggattatcagccctgaatctgatagcagtccatccaccagatggaacaccaactgtatttctctccacaggatcaaccaaattaaactttttag 29554636  T
Q  221 aatcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactctc 302  Q
     ||| ||||||  || | |||| ||   |||  ||||||| |||||||||||||| ||||| ||||||| ||||||| ||||    
T  29554635 tatcctttttaggattaaaattcccttgtcccttaccaactacaaagaaattgaatccatgtagatgaataggatgattctc 29554554  T

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