View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_1 (Length: 753)
Name: NF0829_high_1
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 189 - 377
Target Start/End: Complemental strand, 11688782 - 11688593
Alignment:
| Q |
189 |
aatttctgagctagccaccatttttctctttctcatttcctt-atgaaatgtgtagtgggttttgaaaaagctttctttttcacctattcaacttcaaaa |
287 |
Q |
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| T |
11688782 |
aatttctgagctagccaccatttttctctttctcatttcctttatcaaatgtgtagtgggttttgaaagagctttctttttcacctattcaacttcaaaa |
11688683 |
T |
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| Q |
288 |
gcaataccaccttagatttaaagatcagattcactttcattctataaggtacactctcaaacactttctctcactacaaagttgaaagtc |
377 |
Q |
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| T |
11688682 |
gcaataccaccttagatttaaagatcagattcactttcattctataaggtacactctcaaacactttctctcactacaaagttgaaagtc |
11688593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 437 - 608
Target Start/End: Complemental strand, 11688529 - 11688358
Alignment:
| Q |
437 |
agctgaaaattccaacattttggtatgtttctaaattaattttcttaggatggtattaattaaacaaagtagttggactcttgagtttttcaacaattaa |
536 |
Q |
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| T |
11688529 |
agctgaaaattccaacattttggtatgtttctaaattaattttcttaggatggtattaattaaacaaagtagttggactcttgagtttttcaacaattaa |
11688430 |
T |
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| Q |
537 |
aagaactattacttgcaatgactattcttgttttgttaatactataattcaaaaggttgaaaacattgatta |
608 |
Q |
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| T |
11688429 |
aagaactattacttgcaatgactattcttgttttgttaatactataattcaaaaggttgaaaacattgatta |
11688358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 11688970 - 11688844
Alignment:
| Q |
4 |
ggaggagcagagaagcaacacaagaataattattaacatattagagaagaagcacagcatag----gcaacaactcaaacactaagatgattaacatctt |
99 |
Q |
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| T |
11688970 |
ggagtagcagagaagcaacacaagatta-ttattaacatattagagcagaagcacaacatagataggcaataactcaaacactaagatgattaacatctt |
11688872 |
T |
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| Q |
100 |
aacaatgggggcctaagtgggacccatg |
127 |
Q |
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| T |
11688871 |
aacaatgggggcctaagtaggacccatg |
11688844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 644 - 724
Target Start/End: Complemental strand, 11688322 - 11688241
Alignment:
| Q |
644 |
actgtagctatttcacatctttatcagtcttatgttg-nnnnnnnngtctcaagttatgtttagattagataccttgatttg |
724 |
Q |
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| T |
11688322 |
actgtagctatttcacatctttatcagtcttatgttgtttttttttgtctcaagttatgtttagattagataccttgatttg |
11688241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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