View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_12 (Length: 481)
Name: NF0829_high_12
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 29 - 470
Target Start/End: Complemental strand, 5725858 - 5725416
Alignment:
| Q |
29 |
acattcttatcaacgcttctctgttctcatgaagacagcataaagataagcaatataagacacagataacagtt-ccatcccaaacaaatttactccttt |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5725858 |
acattcttatcaacgcttctctgttctcatgaagacagcataaagataagcaatataagacacagataacagtttccatcccaaacaaatttactccttt |
5725759 |
T |
|
| Q |
128 |
ggcaaagtgctgcaatagagaaatgagagaatcacttgaataaataaacattacaattcttctacacttttcagttgtctctttataaatgggtatctgc |
227 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725758 |
ggcaaagtgctgcaatagagaaatgagagaatcacttgaataaataaacattacaattcttctacacttttcagttgtctctttataaatgggtatctgc |
5725659 |
T |
|
| Q |
228 |
tcatattcttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatatc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5725658 |
tcatattcttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagt |
5725559 |
T |
|
| Q |
328 |
atgttgcactgtccgtcacaatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatatttcttcaggtgaacttatatc |
427 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5725558 |
atgttgcactgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaacttatatc |
5725459 |
T |
|
| Q |
428 |
agctgattcaacagacttcaaaaataatgttccctttggactg |
470 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5725458 |
agctgattcaacagacttcaaaaagaatgttccctttggactg |
5725416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 132 - 403
Target Start/End: Complemental strand, 4414769 - 4414498
Alignment:
| Q |
132 |
aagtgctgcaata-gagaaatgagagaatcacttgaataaataaacattacaattcttctacacttttcagttgtctctttataaatgggtatctgctca |
230 |
Q |
| |
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||||||||||| | ||| |||||||||| | ||||||| |||||| || ||||||| || |||| | ||||||||| || ||||||||||| |||| |
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| T |
4414769 |
aagtgctgcaacacgaggaatgagagaagcccttgaatgaataaaggctaaaattcttttagcctttgtaattgtctcttcatgaatgggtatcttctca |
4414670 |
T |
|
| Q |
231 |
tattcttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatatcatg |
330 |
Q |
| |
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|| |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| || || | | |
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| T |
4414669 |
tagtcttccaatatcatctcaattgtgtgtgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtagg |
4414570 |
T |
|
| Q |
331 |
ttgcactgtccgtcacaatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
403 |
Q |
| |
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||| | |||| ||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||||||||| |
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| T |
4414569 |
ttgtattgtctgtcacaatttggacaacattttctt-cccaacctcttctacaatttcatccatcatcttaaa |
4414498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 243 - 403
Target Start/End: Original strand, 4377214 - 4377374
Alignment:
| Q |
243 |
atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagc-cttttcatatcatgttgcactgtcc |
341 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| | || | || | | | ||| |
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| T |
4377214 |
atcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaat-aagtcgtattatcc |
4377312 |
T |
|
| Q |
342 |
gtcacaatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
403 |
Q |
| |
|
|| |||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
4377313 |
gttacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa |
4377374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 403
Target Start/End: Original strand, 4384791 - 4384947
Alignment:
| Q |
247 |
tctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagc-cttttcatatcatgttgcactgtccgtca |
345 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| | || | | | | | ||||| | |
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|
| T |
4384791 |
tctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaat-aagccgtattatccgtga |
4384889 |
T |
|
| Q |
346 |
caatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
403 |
Q |
| |
|
||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
4384890 |
caacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa |
4384947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 403
Target Start/End: Original strand, 4389791 - 4390057
Alignment:
| Q |
138 |
tgcaatagagaaatgagagaatcacttgaataaataaacattacaattcttctacacttttcagttgtctctttataaatgggtat---ctgctcatatt |
234 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| || |||| || ||| |||| | || |||||| ||||| ||||| || ||| || | |
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|
| T |
4389791 |
tgcaatagagaaatgagagaatccctcgaataaataaaacttgtaatttttttaccctttgtaattatctcttcataaacaggtattttcttctcgtaat |
4389890 |
T |
|
| Q |
235 |
cttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagc-cttttcatatcatgttg |
333 |
Q |
| |
|
||| | |||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| | | | || ||| | |
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|
| T |
4389891 |
cttccaacatcatctcaatgcagtgtgt--cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaat-atgccg |
4389987 |
T |
|
| Q |
334 |
cactgtccgtcacaatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
403 |
Q |
| |
|
| | |||||||||| ||| |||||||||||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
4389988 |
tattatccgtcacaacttgaacaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
4390057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 4370058 - 4370202
Alignment:
| Q |
243 |
atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagc--cttttcatatcatgttgcactgtc |
340 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| |||||| ||||||| |||||||||||||||| | || | || | ||| || | |||| |
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|
| T |
4370058 |
atcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcaga--atggtgtattgtc |
4370155 |
T |
|
| Q |
341 |
cgtcacaatttgtacaacattttcttccccaacttcttcaacaatgt |
387 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
4370156 |
cgtcacaatttggacaacattttcttctccaacctcttcaacaatgt |
4370202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 339 - 481
Target Start/End: Original strand, 4365754 - 4365899
Alignment:
| Q |
339 |
tccgtcacaatttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatatttcttcaggtg-----aacttatatcagctga |
433 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||| |||||||||| |||||||||||||||||| | || ||||| | ||| ||||||| | |
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|
| T |
4365754 |
tccgtcacaatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaac--atatcagacgc |
4365851 |
T |
|
| Q |
434 |
ttcaacagacttcaaaaataatgttccctttggactggtcactaacca |
481 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
4365852 |
atcaatagacttcaaaaagaatgttccctttggactgttcactaacca |
4365899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 250 - 403
Target Start/End: Original strand, 4360269 - 4360422
Alignment:
| Q |
250 |
caatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatatcatgttgcactgtccgtcacaat |
349 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||| || | || | |||| ||| || | ||||| |||| |
|
|
| T |
4360269 |
caatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaac |
4360368 |
T |
|
| Q |
350 |
ttgtacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
403 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
4360369 |
gtggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaa |
4360422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 4365675 - 4365711
Alignment:
| Q |
260 |
tgttgcacaaggtgtccaatacaacctagtccttttc |
296 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
4365675 |
tgttgcacaaggggtccaatacagcctagtccttttc |
4365711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 4370241 - 4370297
Alignment:
| Q |
423 |
atatcagctgattcaacagacttcaaaaataatgttccctttggactggtcactaac |
479 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||| ||||||||| |||||||| |
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|
| T |
4370241 |
atatcagttgcatcaatagacttcaaaaagaatgttccgtttggactgttcactaac |
4370297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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