View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_16 (Length: 469)
Name: NF0829_high_16
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 10857141 - 10857480
Alignment:
| Q |
11 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
110 |
Q |
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| T |
10857141 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccagactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
10857240 |
T |
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| Q |
111 |
gggaagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaacca |
210 |
Q |
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| T |
10857241 |
gggaagttttccttgtgctttccatccttggagaaagtgtccttgattcaatgcatctggatgaaaactttcagtccagtcaacatgatagatccgacca |
10857340 |
T |
|
| Q |
211 |
aattgtcttc---agttacat---tcgaagatgcaacactacgatgggaaggtgatctgaattctacaatacgcaagaggtttgaggaaaaggtatgtac |
304 |
Q |
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| T |
10857341 |
aattgtcttctggagttacattcatcaaagataaaaccccacaatgggaaggtgatctgaatgctacaatacgcaagaggtttgaggaagaggtatctac |
10857440 |
T |
|
| Q |
305 |
aggatcaataacatatatactcttttggttgttgatcaaa |
344 |
Q |
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| T |
10857441 |
aaaatcaataacatatatactcttacagttgttgatcaaa |
10857480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 10888644 - 10888944
Alignment:
| Q |
11 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccacactttgtttctaaaagatttatcaaagctaaggtgcttttaccct |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10888644 |
cacagagggggatgaatcaggtgaagataaaaagttaatatttgaggacctccgcactttgtttctaaaagatttatcaaagctaaggtgcttttattct |
10888743 |
T |
|
| Q |
111 |
gggaagttttccttgtgctttccatccttggagaaagtatccttgattcaatgcatcttgatgaaaactttctgtccagtcaacaagatagatccaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
10888744 |
gggaagttttccttgtgctttccatccttggagaaagtgtccttgattctatgcatctcgatgaatactttcagtccagtcaacgagatagatccaacca |
10888843 |
T |
|
| Q |
211 |
aattgtctt------cagttacattcga-agatgcaacactacgatgggaaggtgatctgaattctacaatacgcaagaggtttgaggaaaaggtatgta |
303 |
Q |
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|||||| || ||||| |||| | | | | | || || |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
10888844 |
aattgtattatggaggagttagattccacacaggtga-accacaatgggaagttgatctgaattctacaatacgcaagtgggttgaggaagaggtatgta |
10888942 |
T |
|
| Q |
304 |
ca |
305 |
Q |
| |
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|| |
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|
| T |
10888943 |
ca |
10888944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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