View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_17 (Length: 468)
Name: NF0829_high_17
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 167 - 468
Target Start/End: Complemental strand, 37790420 - 37790119
Alignment:
| Q |
167 |
tactcttattatattatcatcatccctaaaggaaaggtagtgatcacgtagtcgatagggagcataggaatggacttctctcgtgttaaactttcacaca |
266 |
Q |
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| T |
37790420 |
tactcttattatattatcatcatccctaaaggaaaggtagtgatcacgtagtcgatagggagcataggaatggacttctctcgtgttaaactttcacaca |
37790321 |
T |
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| Q |
267 |
attttgtcatattataaatttcacctaagaataaaatcttgtaacagccagcttgctcaaatttttaaacatatttgttttggaatgcaggttggggagg |
366 |
Q |
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| T |
37790320 |
attttgtcatattataaatttcacctaagaataaaatcttgtaacagccagcttgctcaaatttttaaacatatttgttttggaatgcaggttggggagg |
37790221 |
T |
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| Q |
367 |
gaattatgttttataaaacaattagtcttaacaattatactaaacttattatgtcgtataattttaacccccagatcaagatacaactcaaatcaaacat |
466 |
Q |
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| T |
37790220 |
gaattaagttttataaaacaattagtcttaacaattatactaaacttattatgtcgtataattttaaccctcagatcaagatacaactcaaatcaaacat |
37790121 |
T |
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| Q |
467 |
tc |
468 |
Q |
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| T |
37790120 |
tc |
37790119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 37790550 - 37790406
Alignment:
| Q |
11 |
cagagacaatttttgtgggtccaatttaatcataattaaactatataggtaatcacggatagatccagcataatcatcacggattagccaaaatgaaata |
110 |
Q |
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| T |
37790550 |
cagagacaatttttgtgggtccaatttaatcataattaaactatataggtaatcacggatagatccagcataatcatcacggattagccaaaatgaaata |
37790451 |
T |
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| Q |
111 |
atttaaatttgtcacgggttcatgttaaaatactcttattatatt |
155 |
Q |
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| T |
37790450 |
atttaaatttgtcacgggttcatgttaaaatactcttattatatt |
37790406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 3925819 - 3925861
Alignment:
| Q |
66 |
cggatagatccagcataatcatcacggattagccaaaatgaaa |
108 |
Q |
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| T |
3925819 |
cggatagatccaccataatcatcacggattagccaaaatgaaa |
3925861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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