View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0829_high_22 (Length: 439)

Name: NF0829_high_22
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0829_high_22
NF0829_high_22
[»] chr4 (8 HSPs)
chr4 (67-439)||(4469090-4469462)
chr4 (3-92)||(4469095-4469184)
chr4 (179-281)||(11307292-11307396)
chr4 (210-266)||(47680706-47680762)
chr4 (169-249)||(11307613-11307695)
chr4 (210-249)||(51681335-51681374)
chr4 (215-266)||(56160770-56160821)
chr4 (210-266)||(8445940-8445996)
[»] chr8 (6 HSPs)
chr8 (174-267)||(5981458-5981553)
chr8 (170-251)||(1409220-1409301)
chr8 (205-281)||(36046842-36046918)
chr8 (210-267)||(5981750-5981807)
chr8 (202-238)||(13758985-13759021)
chr8 (202-238)||(23140563-23140599)
[»] chr6 (3 HSPs)
chr6 (170-281)||(7301585-7301699)
chr6 (210-250)||(22612271-22612311)
chr6 (202-238)||(11554343-11554379)
[»] chr3 (3 HSPs)
chr3 (210-284)||(51677597-51677671)
chr3 (212-267)||(53981614-53981669)
chr3 (210-267)||(32201124-32201181)
[»] chr1 (2 HSPs)
chr1 (169-268)||(43834537-43834638)
chr1 (210-256)||(26231682-26231728)
[»] chr5 (1 HSPs)
chr5 (230-267)||(30886438-30886475)
[»] chr2 (3 HSPs)
chr2 (169-281)||(19548186-19548299)
chr2 (211-265)||(19547956-19548010)
chr2 (202-238)||(41752933-41752969)
[»] scaffold0548 (1 HSPs)
scaffold0548 (170-249)||(4102-4183)
[»] chr7 (1 HSPs)
chr7 (202-238)||(4109583-4109619)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 67 - 439
Target Start/End: Original strand, 4469090 - 4469462
Alignment:
Q  67 acgatggtacaagtataagtgatgtgggttcctcacatttgaggaaatattggatatataagagatgggacgatggtacaagtataagtgatgtgtcttg 166  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  4469090 acgacggtacaagtataagtgatgtgggttcctcacatttgaggaaatgttggatatataagagatgggacgacggtacaagtataagtgatgtgccttg 4469189  T
Q  167 aagaaatgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  4469190 aagaaatgttgtatatataagagaggggacacacgtctaatgtcttaaggttttgggtgaaaatgtgatgtctgagtctcttaattgtcctagacgttta 4469289  T
Q  267 gtatattgtcgctcctgaaactttccaacatcactaaatcgattcaaaatcacaaaatgggtgtatgaaccatccaattttaatccaaagactccaatat 366  Q
    |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4469290 gtatattgtcgctccccagactttccaacatcactaaatcgattcaaaatcacaaaatgggtgtatgaaccatccaattttaatccaaagactccaatat 4469389  T
Q  367 atcaaccacattgacagatccaaattcatataaaaacatcactatgaatctaagctaactgtgtttctctgat 439  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4469390 atcaaccacattgacagatccatattcatataaaaacatcactatgaatctaagctaactgtgtttctctgat 4469462  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 4469095 - 4469184
Alignment:
Q  3 ggtacaagtataagtgatgtgggttcctcacatttgaggaaatattggatatataagagatgggacgatggtacaagtataagtgatgtg 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  4469095 ggtacaagtataagtgatgtgggttcctcacatttgaggaaatgttggatatataagagatgggacgacggtacaagtataagtgatgtg 4469184  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 11307396 - 11307292
Alignment:
Q  179 atatataagagaggggacac--acgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtc 276  Q
    ||||||||||||||||||||  |  ||| ||  ||||| |||||||||| | ||||||||||||||||||||||| |||||  || |||||  |||||||    
T  11307396 atatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttattgtc 11307297  T
Q  277 gctcc 281  Q
    |||||    
T  11307296 gctcc 11307292  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 47680706 - 47680762
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| ||||||||    
T  47680706 cttaaggttttgggtggagatgtggtgtctaagtctcttattggtcctggacgttta 47680762  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 11307695 - 11307613
Alignment:
Q  169 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 249  Q
    ||||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  11307695 gaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 11307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 51681335 - 51681374
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctctta 249  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51681335 cttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 56160770 - 56160821
Alignment:
Q  215 ggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    ||||||||||| |||| |||||||||||||||||||| ||| |||| |||||    
T  56160770 ggttttgggtggaaatatggtgtctaagtctcttagtggtcttagatgttta 56160821  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 8445940 - 8445996
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    ||||||||||| |||| | |||||| |||||||||||||| ||||||| || |||||    
T  8445940 cttaaggttttaggtggagatgtggcgtctaagtctcttatttgtcctggaagttta 8445996  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 5981553 - 5981458
Alignment:
Q  174 gttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 267  Q
    |||| |||||||||||||||||| || |  ||| ||  |||||||||||||||| ||||||||||||||||||||||| | || || |||||||||    
T  5981553 gttggatatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttag 5981458  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 1409220 - 1409301
Alignment:
Q  170 aaatgttgtatatataagagaggggacacacgcctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagt 251  Q
    |||||||| ||||||||| |||||||  ||   ||||| ||||||| |||||| |||||||||||||||||||| |||||||    
T  1409220 aaatgttggatatataagggaggggatccatagctaatttcttaagattttggatgaaaatgtggtgtctaagtttcttagt 1409301  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 36046918 - 36046842
Alignment:
Q  205 aatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcc 281  Q
    ||||||||||| |||| | |||| ||||||| ||||||| | |||||  ||||||||||||||| ||||||||||||    
T  36046918 aatatcttaagattttagatgaagatgtggtatctaagttttttagtgatcctagacgtttagtctattgtcgctcc 36046842  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 5981807 - 5981750
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 267  Q
    |||||||||||||||| | ||||||||||||||||||||| | ||||| || ||||||    
T  5981807 cttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttag 5981750  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 13758985 - 13759021
Alignment:
Q  202 cctaatatcttaaggttttgggtgaaaatgtggtgtc 238  Q
    |||||| |||||||||||||||| |||||||||||||    
T  13758985 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 13759021  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 23140599 - 23140563
Alignment:
Q  202 cctaatatcttaaggttttgggtgaaaatgtggtgtc 238  Q
    |||||| |||||||||||||||| |||||||||||||    
T  23140599 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 23140563  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 7301699 - 7301585
Alignment:
Q  170 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggtttt-gggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    |||||||  |||||||| ||||||||||||    ||||||||||||||||||| |||| | | | |||||||||||||||||||| |||||||| |||||    
T  7301699 aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttttgggtaagagtttggtgtctaagtctcttagtggtcctagaggttta 7301600  T
Q  267 gtatattgtcgctcc 281  Q
    |   |||||||||||    
T  7301599 gcccattgtcgctcc 7301585  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 22612311 - 22612271
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttag 250  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  22612311 cttaaggttttgggtgtagatgtggtgtctaagtctcttag 22612271  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 11554379 - 11554343
Alignment:
Q  202 cctaatatcttaaggttttgggtgaaaatgtggtgtc 238  Q
    |||||| |||||||||||||||| |||||||||||||    
T  11554379 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 11554343  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 51677597 - 51677671
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttagtatattgtcgctcctga 284  Q
    ||||||||||| | || | ||||| ||||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  51677597 cttaaggtttttgatggagatgtgatgtctaagtctcttagtagtcctagacgtttagcacattgttgctcctga 51677671  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 53981614 - 53981669
Alignment:
Q  212 taaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 267  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||| | |||||||||    
T  53981614 taaggttttgggtggagatgtggtgtctaagtcttttagtggtcttggacgtttag 53981669  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 32201124 - 32201181
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgtttag 267  Q
    |||||| ||||||||| | ||||||||||||||| ||||||| |||||  ||||||||    
T  32201124 cttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttag 32201181  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 43834537 - 43834638
Alignment:
Q  169 gaaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    ||||||||| |||||||||||||||||| ||    |||||| |||||||||||| | || | |||||| |||||||||||||  | ||||||||||||||    
T  43834537 gaaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgttta 43834636  T
Q  267 gt 268  Q
    ||    
T  43834637 gt 43834638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 26231728 - 26231682
Alignment:
Q  210 cttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcc 256  Q
    |||||||||||||||| | |||||||||| |||||||||||| ||||    
T  26231728 cttaaggttttgggtggagatgtggtgtccaagtctcttagtggtcc 26231682  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 30886475 - 30886438
Alignment:
Q  230 tgtggtgtctaagtctcttagttgtcctagacgtttag 267  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30886475 tgtggtgtctaagtctcttagtggtcctagacgtttag 30886438  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 19548186 - 19548299
Alignment:
Q  169 gaaatgttgtatatataagagaggggacacacgc--ctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttta 266  Q
    ||||||||| |||||||||||||| ||| ||     ||||| ||||||||||||||||| | ||||||||| |||||||||| |  ||||||||| ||||    
T  19548186 gaaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctttg-ggtcctagacattta 19548284  T
Q  267 gtatattgtcgctcc 281  Q
    | | ||||| |||||    
T  19548285 gcacattgttgctcc 19548299  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 19547956 - 19548010
Alignment:
Q  211 ttaaggttttgggtgaaaatgtggtgtctaagtctcttagttgtcctagacgttt 265  Q
    ||||||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||    
T  19547956 ttaaggttttgtgtggaaatgtggtgtctaaatatcttagtggtcctggacgttt 19548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 41752969 - 41752933
Alignment:
Q  202 cctaatatcttaaggttttgggtgaaaatgtggtgtc 238  Q
    |||||| |||||||||||||||| |||||||||||||    
T  41752969 cctaatgtcttaaggttttgggtcaaaatgtggtgtc 41752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 4183 - 4102
Alignment:
Q  170 aaatgttgtatatataagagaggggacacacg--cctaatatcttaaggttttgggtgaaaatgtggtgtctaagtctctta 249  Q
    |||||||| |||||| ||||||||||||||    ||| || |||||| |||||||||| | ||||||||||||||| |||||    
T  4183 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtctaagtgtctta 4102  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 4109619 - 4109583
Alignment:
Q  202 cctaatatcttaaggttttgggtgaaaatgtggtgtc 238  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4109619 cctaatgttttaaggttttgggtgaaaatgtggtgtc 4109583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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