View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_24 (Length: 428)
Name: NF0829_high_24
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 12583640 - 12583227
Alignment:
| Q |
1 |
tccataactgtttcccttgttatattgatctatgaacttcttgctacatttgtgctattcaaactaaatcatatattcttttgaagattttcttgcacag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12583640 |
tccataactgtttcccttgttatattcatctatgaacttcttgctacatttgtgctattcaaactaaatcatatattcttttgaagattttcttgcacag |
12583541 |
T |
|
| Q |
101 |
gttctcaatactagtatattacagataaaagaattgaaattgcagatgttagtaggttattacgataccatagattaaatatatgacatcctaggttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12583540 |
gttctcaatactagtatattacagataaaagaattgaaattgcagatgttagta--------cgataccatagattaaatatatgacatcctaggttttt |
12583449 |
T |
|
| Q |
201 |
ggcaaatcattatatacaatttattggtgtataattnnnnnnnnnnnnnnnnggta--cccccgtgagatatttatccttctctaatgataagttgattc |
298 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12583448 |
gtcaaatcattatatacaatttattggtgtataattaaaaaaaaaaaaaaaaggtaaacccccgtgagatatttatcctcctctaatgataagttgattc |
12583349 |
T |
|
| Q |
299 |
acagagaaaaccactccctgattcgaaagaatatttcctccaatttgcctacgccattgacgatagtttctttctttaccatcattctcggtctcactcc |
398 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12583348 |
acagagaaaaccgctccctgattcgaaagaatatttcctccaatttgcctacaccattgacgatagtttctttctttaccatcattctcggtctcactcc |
12583249 |
T |
|
| Q |
399 |
caacctgttgccccttcatatc |
420 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
12583248 |
caacctgttgccccttcatatc |
12583227 |
T |
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