View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0829_high_34 (Length: 363)
Name: NF0829_high_34
Description: NF0829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0829_high_34 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 3899165 - 3898841
Alignment:
| Q |
29 |
atgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899165 |
atgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagct |
3899066 |
T |
|
| Q |
129 |
tagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaaggaggaagaaggtaga |
228 |
Q |
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| T |
3899065 |
tagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcgaaggaggaagaaggtaga |
3898966 |
T |
|
| Q |
229 |
aagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattctggagttgctggatt |
328 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898965 |
aagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattctggagttgctggatt |
3898866 |
T |
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| Q |
329 |
cgaaacttataccttctgcttcatc |
353 |
Q |
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| T |
3898865 |
cgaaacttataccttctgcttcatc |
3898841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 40 - 350
Target Start/End: Original strand, 46283124 - 46283440
Alignment:
| Q |
40 |
gcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagcttagcttggaag |
139 |
Q |
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|||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| | |||||||||||| | |||| |
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| T |
46283124 |
gcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagcttagcgtcgaag |
46283223 |
T |
|
| Q |
140 |
agatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcct---ttcga------aggaggaagaaggtagaaa |
230 |
Q |
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||| |||||| |||| |||||||||||||||| ||||| | | || ||||| |||| ||||||| | ||||| || |||||||||||||||| |
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| T |
46283224 |
agaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattgaacagaaggaagaaggtagaaa |
46283323 |
T |
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| Q |
231 |
gaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattctggagttgctggattcg |
330 |
Q |
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||||||| ||||| ||||||| ||| ||| | |||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
46283324 |
gaatgaa---gatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgttggattcg |
46283420 |
T |
|
| Q |
331 |
aaacttataccttctgcttc |
350 |
Q |
| |
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|| ||||||||||| ||||| |
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| T |
46283421 |
aatcttataccttcagcttc |
46283440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 5496 - 5172
Alignment:
| Q |
29 |
atgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5496 |
atgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagct |
5397 |
T |
|
| Q |
129 |
tagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttcgaaggaggaagaaggtaga |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5396 |
tagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttcaaaggaggaagaaggtaga |
5297 |
T |
|
| Q |
229 |
aagaatgaagatgatcacgttgtgcatgttaagaaatacaagtccaaagttgaatcggagttggagaatgtttgtggtagtattctggagttgctggatt |
328 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5296 |
aagaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattctggagttgctggatt |
5197 |
T |
|
| Q |
329 |
cgaaacttataccttctgcttcatc |
353 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5196 |
cgaaacttataccttctgcttcatc |
5172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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